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2012


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Personalized medicine: from genotypes and molecular phenotypes towards computed therapy

Stegle, O., Roth, FP., Morris, Q., Listgarten, J.

In pages: 323-326, (Editors: Altman, R.B. , A.K. Dunker, L. Hunter, T. Murray, T.E. Klein), World Scientific Publishing, Singapore, Pacific Symposium on Biocomputing (PSB), January 2012 (inproceedings)

Abstract
Joint genotyping and large-scale phenotyping of molecular traits are currently available for a number of important patient study cohorts and will soon become feasible in routine medical practice. These data are one component of several that are setting the stage for the development of personalized medicine, promising to yield better disease classification, enabling more specific treatment, and also allowing for improved preventive medical screening. This conference session explores statistical challenges and new opportunities that arise from application of genome-scale experimentation for personalized genomics and medicine.

ei

Web DOI [BibTex]

2012


Web DOI [BibTex]


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Approximate Gaussian Integration using Expectation Propagation

Cunningham, J., Hennig, P., Lacoste-Julien, S.

In pages: 1-11, -, January 2012 (inproceedings) Submitted

Abstract
While Gaussian probability densities are omnipresent in applied mathematics, Gaussian cumulative probabilities are hard to calculate in any but the univariate case. We offer here an empirical study of the utility of Expectation Propagation (EP) as an approximate integration method for this problem. For rectangular integration regions, the approximation is highly accurate. We also extend the derivations to the more general case of polyhedral integration regions. However, we find that in this polyhedral case, EP's answer, though often accurate, can be almost arbitrarily wrong. These unexpected results elucidate an interesting and non-obvious feature of EP not yet studied in detail, both for the problem of Gaussian probabilities and for EP more generally.

ei pn

Web [BibTex]

Web [BibTex]


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On empirical tradeoffs in large scale hierarchical classification

Babbar, R., Partalas, I., Gaussier, E., Amblard, C.

In 21st ACM International Conference on Information and Knowledge Management, pages: 2299-2302, (Editors: G Lebanon and H Wang and MJ Zaki), ACM, CIKM, 2012 (inproceedings)

ei

Web [BibTex]

Web [BibTex]


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Kernel Topic Models

Hennig, P., Stern, D., Herbrich, R., Graepel, T.

In Fifteenth International Conference on Artificial Intelligence and Statistics, 22, pages: 511-519, JMLR Proceedings, (Editors: Lawrence, N. D. and Girolami, M.), JMLR.org, AISTATS , 2012 (inproceedings)

Abstract
Latent Dirichlet Allocation models discrete data as a mixture of discrete distributions, using Dirichlet beliefs over the mixture weights. We study a variation of this concept, in which the documents' mixture weight beliefs are replaced with squashed Gaussian distributions. This allows documents to be associated with elements of a Hilbert space, admitting kernel topic models (KTM), modelling temporal, spatial, hierarchical, social and other structure between documents. The main challenge is efficient approximate inference on the latent Gaussian. We present an approximate algorithm cast around a Laplace approximation in a transformed basis. The KTM can also be interpreted as a type of Gaussian process latent variable model, or as a topic model conditional on document features, uncovering links between earlier work in these areas.

ei pn

PDF Web [BibTex]

PDF Web [BibTex]


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Structured Apprenticeship Learning

Boularias, A., Kroemer, O., Peters, J.

In European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD), 2012 (inproceedings)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Blind Correction of Optical Aberrations

Schuler, C., Hirsch, M., Harmeling, S., Schölkopf, B.

In Computer Vision - ECCV 2012, LNCS Vol. 7574, pages: 187-200, (Editors: A Fitzgibbon, S Lazebnik, P Perona, Y Sato, and C Schmid), Springer, Berlin, Germany, 12th IEEE European Conference on Computer Vision, ECCV, 2012 (inproceedings)

Abstract
Camera lenses are a critical component of optical imaging systems, and lens imperfections compromise image quality. While traditionally, sophisticated lens design and quality control aim at limiting optical aberrations, recent works [1,2,3] promote the correction of optical flaws by computational means. These approaches rely on elaborate measurement procedures to characterize an optical system, and perform image correction by non-blind deconvolution. In this paper, we present a method that utilizes physically plausible assumptions to estimate non-stationary lens aberrations blindly, and thus can correct images without knowledge of specifics of camera and lens. The blur estimation features a novel preconditioning step that enables fast deconvolution. We obtain results that are competitive with state-of-the-art non-blind approaches.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Interactive Domain Adaptation Technique for the Classification of Remote Sensing Images

Persello, C., Dinuzzo, F.

In IEEE International Geoscience and Remote Sensing Symposium , pages: 6872-6875, IEEE, IGARSS, 2012 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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Point Cloud Completion Using Symmetries and Extrusions

Kroemer, O., Ben Amor, H., Ewerton, M., Peters, J.

In IEEE-RAS International Conference on Humanoid Robots , pages: 680-685, IEEE, HUMANOIDS, 2012 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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The representer theorem for Hilbert spaces: a necessary and sufficient condition

Dinuzzo, F., Schölkopf, B.

In Advances in Neural Information Processing Systems 25, pages: 189-196, (Editors: P Bartlett, FCN Pereira, CJC. Burges, L Bottou, and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Complexity of computing distances between geometric trees

Feragen, A.

In Structural, Syntactic, and Statistical Pattern Recognition, LNCS vol 7626, pages: 89-97, (Editors: G Gimel´farb and E Hancock and A Imiya and A Kuijper and M Kudo and S Omachi and T Windeatt and K Yamada), Springer, 14th international workshop on Syntactical and Structural Pattern Recognition (S+SSPR), 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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Same, same, but different: EEG correlates of n-back and span working memory tasks

Scharinger, C., Cienak, G., Walter, C., Zander, TO., Gerjets, P.

In Proceedings of the 48th Congress of the German Society for Psychology, 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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Adaptive Classifier Selection in Large-Scale Hierarchical Classification

Partalas, I., Babbar, R., Gaussier, E., Amblard, C.

In Neural Information Processing - 19th International Conference, Lecture Notes in Computer Science, Vol. 7665, pages: 612-619, (Editors: T Huang and Z Zeng and C Li and CS Leung), Springer, ICONIP, 2012 (inproceedings)

ei

Web [BibTex]

Web [BibTex]


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Probabilistic Modeling of Human Movements for Intention Inference

Wang, Z., Deisenroth, M., Ben Amor, H., Vogt, D., Schölkopf, B., Peters, J.

In Proceedings of Robotics: Science and Systems VIII, pages: 8, R:SS, 2012 (inproceedings)

Abstract
Inference of human intention may be an essential step towards understanding human actions [21] and is hence important for realizing efficient human-robot interaction. In this paper, we propose the Intention-Driven Dynamics Model (IDDM), a latent variable model for inferring unknown human intentions. We train the model based on observed human behaviors/actions and we introduce an approximate inference algorithm to efficiently infer the human’s intention from an ongoing action. We verify the feasibility of the IDDM in two scenarios, i.e., target inference in robot table tennis and action recognition for interactive humanoid robots. In both tasks, the IDDM achieves substantial improvements over state-of-the-art regression and classification.

ei

PDF link (url) [BibTex]

PDF link (url) [BibTex]


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Solving Nonlinear Continuous State-Action-Observation POMDPs for Mechanical Systems with Gaussian Noise

Deisenroth, M., Peters, J.

In The 10th European Workshop on Reinforcement Learning (EWRL), 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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On Causal and Anticausal Learning

Schölkopf, B., Janzing, D., Peters, J., Sgouritsa, E., Zhang, K., Mooij, J.

In Proceedings of the 29th International Conference on Machine Learning, pages: 1255-1262, (Editors: J Langford and J Pineau), Omnipress, New York, NY, USA, ICML, 2012 (inproceedings)

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Learning from distributions via support measure machines

Muandet, K., Fukumizu, K., Dinuzzo, F., Schölkopf, B.

In Advances in Neural Information Processing Systems 25, pages: 10-18, (Editors: P Bartlett, FCN Pereira, CJC. Burges, L Bottou, and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Scalable nonconvex inexact proximal splitting

Sra, S.

In Advances of Neural Information Processing Systems 25, pages: 539-547, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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A min-cut solution to mapping phenotypes to networks of genetic markers

Azencott, C., Grimm, D., Kawahara, Y., Borgwardt, K.

In 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB), 2012 (inproceedings) Submitted

ei

[BibTex]

[BibTex]


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Efficiently mapping phenotypes to networks of genetic loci

Azencott, C., Grimm, D., Kawahara, Y., Borgwardt, K.

In NIPS Workshop on Machine Learning in Computational Biology (MLCB), 2012 (inproceedings) Submitted

ei

[BibTex]

[BibTex]


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Modelling transition dynamics in MDPs with RKHS embeddings

Grünewälder, S., Lever, G., Baldassarre, L., Pontil, M., Gretton, A.

In Proceedings of the 29th International Conference on Machine Learning, pages: 535-542, (Editors: J Langford and J Pineau), Omnipress, New York, NY, USA, ICML, 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Clustering: Science or Art?

von Luxburg, U., Williamson, R., Guyon, I.

In JMLR Workshop and Conference Proceedings, Volume 27, pages: 65-79, Workshop on Unsupervised Learning and Transfer Learning, 2012 (inproceedings)

Abstract
We examine whether the quality of di erent clustering algorithms can be compared by a general, scienti cally sound procedure which is independent of particular clustering algorithms. We argue that the major obstacle is the diculty in evaluating a clustering algorithm without taking into account the context: why does the user cluster his data in the rst place, and what does he want to do with the clustering afterwards? We argue that clustering should not be treated as an application-independent mathematical problem, but should always be studied in the context of its end-use. Di erent techniques to evaluate clustering algorithms have to be developed for di erent uses of clustering. To simplify this procedure we argue that it will be useful to build a \taxonomy of clustering problems" to identify clustering applications which can be treated in a uni ed way and that such an e ort will be more fruitful than attempting the impossible | developing \optimal" domain-independent clustering algorithms or even classifying clustering algorithms in terms of how they work.

ei

PDF [BibTex]

PDF [BibTex]


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A Brain-Robot Interface for Studying Motor Learning after Stroke

Meyer, T., Peters, J., Brötz, D., Zander, T., Schölkopf, B., Soekadar, S., Grosse-Wentrup, M.

In IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), pages: 4078 - 4083 , IEEE, Piscataway, NJ, USA, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Generalization of Human Grasping for Multi-Fingered Robot Hands

Ben Amor, H., Kroemer, O., Hillenbrand, U., Neumann, G., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems , pages: 2043-2050, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Learning Concurrent Motor Skills in Versatile Solution Spaces

Daniel, C., Neumann, G., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems , pages: 3591-3597, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Learning to Select and Generalize Striking Movements in Robot Table Tennis

Mülling, K., Kober, J., Kroemer, O., Peters, J.

In AAAI Fall Symposium on Robots Learning Interactively from Human Teachers, 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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Computational vascular morphometry for the assessment of pulmonary vascular disease based on scale-space particles

Estépar, R., Ross, J., Krissian, K., Schultz, T., Washko, G., Kindlmann, G.

In pages: 1479-1482, IEEE, 9th International Symposium on Biomedical Imaging (ISBI) , 2012 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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Hilbert space embedding for Dirichlet Process mixtures

Muandet, K.

In NIPS Workshop on confluence between kernel methods and graphical models, 2012 (inproceedings)

ei

arXiv [BibTex]

arXiv [BibTex]


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Causal discovery with scale-mixture model for spatiotemporal variance dependencies

Chen, Z., Zhang, K., Chan, L.

In Advances in Neural Information Processing Systems 25, pages: 1736-1744, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Bridging Offline and Online Social Graph Dynamics

Gomez Rodriguez, M., Rogati, M.

In 21st ACM Conference on Information and Knowledge Management, pages: 2447-2450, (Editors: Chen, X., Lebanon, G., Wang, H. and Zaki, M. J.), ACM, CIKM, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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A new metric on the manifold of kernel matrices with application to matrix geometric means

Sra, S.

In Advances in Neural Information Processing Systems 25, pages: 144-152, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Conditional mean embeddings as regressors

Grünewälder, S., Lever, G., Baldassarre, L., Patterson, S., Gretton, A., Pontil, M.

In Proceedings of the 29th International Conference on Machine Learning, pages: 1823-1830, (Editors: J Langford and J Pineau), Omnipress, New York, NY, USA, ICML, 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Shortest path distance in random k-nearest neighbor graphs

Alamgir, M., von Luxburg, U.

In Proceedings of the 29th International Conference on Machine Learning, International Machine Learning Society, International Conference on Machine Learning (ICML), 2012 (inproceedings)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Toward Fast Policy Search for Learning Legged Locomotion

Deisenroth, M., Calandra, R., Seyfarth, A., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems , pages: 1787-1792, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Robot Skill Learning

Peters, J., Kober, J., Mülling, K., Nguyen-Tuong, D., Kroemer, O.

In 20th European Conference on Artificial Intelligence , pages: 40-45, ECAI, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Towards a learning-theoretic analysis of spike-timing dependent plasticity

Balduzzi, D., Besserve, M.

In Advances in Neural Information Processing Systems 25, pages: 2465-2473, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Recording and Playback of Camera Shake: Benchmarking Blind Deconvolution with a Real-World Database

Köhler, R., Hirsch, M., Mohler, B., Schölkopf, B., Harmeling, S.

In Computer Vision - ECCV 2012, LNCS Vol. 7578, pages: 27-40, (Editors: A. Fitzgibbon, S. Lazebnik, P. Perona, Y. Sato, and C. Schmid), Springer, Berlin, Germany, 12th European Conference on Computer Vision, ECCV , 2012 (inproceedings)

Abstract
Motion blur due to camera shake is one of the predominant sources of degradation in handheld photography. Single image blind deconvolution (BD) or motion deblurring aims at restoring a sharp latent image from the blurred recorded picture without knowing the camera motion that took place during the exposure. BD is a long-standing problem, but has attracted much attention recently, cumulating in several algorithms able to restore photos degraded by real camera motion in high quality. In this paper, we present a benchmark dataset for motion deblurring that allows quantitative performance evaluation and comparison of recent approaches featuring non-uniform blur models. To this end, we record and analyse real camera motion, which is played back on a robot platform such that we can record a sequence of sharp images sampling the six dimensional camera motion trajectory. The goal of deblurring is to recover one of these sharp images, and our dataset contains all information to assess how closely various algorithms approximate that goal. In a comprehensive comparison, we evaluate state-of-the-art single image BD algorithms incorporating uniform and non-uniform blur models.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Towards identifying and validating cognitive correlates in a passive Brain-Computer Interface for detecting Loss of Control

Zander, TO., Pape, AA.

In Proceedings of the 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, IEEE, EMBC, 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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Neural correlates of workload and puzzlement during loss of control

Pape, AA., Gerjets, P., Zander, TO.

In Meeting of the EARLI SIG 22 Neuroscience and Education, 2012 (inproceedings)

ei

[BibTex]

[BibTex]


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Hypothesis testing using pairwise distances and associated kernels

Sejdinovic, D., Gretton, A., Sriperumbudur, B., Fukumizu, K.

In Proceedings of the 29th International Conference on Machine Learning, pages: 1111-1118, (Editors: J Langford and J Pineau), Omnipress, New York, NY, USA, ICML, 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Efficient Training of Graph-Regularized Multitask SVMs

Widmer, C., Kloft, M., Görnitz, N., Rätsch, G.

In Machine Learning and Knowledge Discovery in Databases - European Conference, ECML/PKDD 2012, LNCS Vol. 7523, pages: 633-647, (Editors: PA Flach and T De Bie and N Cristianini), Springer, Berlin, Germany, ECML, 2012 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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Hilbert Space Embeddings of POMDPs

Nishiyama, Y., Boularias, A., Gretton, A., Fukumizu, K.

In Conference on Uncertainty in Artificial Intelligence (UAI), 2012 (inproceedings)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Learning Throwing and Catching Skills

Kober, J., Mülling, K., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems , pages: 5167-5168, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Maximally Informative Interaction Learning for Scene Exploration

van Hoof, H., Kroemer, O., Ben Amor, H., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems, pages: 5152-5158, IROS, 2012 (inproceedings)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Investigating the Neural Basis of Brain-Computer Interface (BCI)-based Stroke Rehabilitation

Meyer, T., Peters, J., Zander, T., Brötz, D., Soekadar, S., Schölkopf, B., Grosse-Wentrup, M.

In International Conference on NeuroRehabilitation (ICNR) , pages: 617-621, (Editors: JL Pons, D Torricelli, and M Pajaro), Springer, Berlin, Germany, ICNR, 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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A Nonparametric Conjugate Prior Distribution for the Maximizing Argument of a Noisy Function

Ortega, P., Grau-Moya, J., Genewein, T., Balduzzi, D., Braun, D.

In Advances in Neural Information Processing Systems 25, pages: 3014-3022, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Algorithms for Learning Markov Field Policies

Boularias, A., Kroemer, O., Peters, J.

In Advances in Neural Information Processing Systems 25, pages: 2186-2194, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Semi-Supervised Domain Adaptation with Copulas

Lopez-Paz, D., Hernandez-Lobato, J., Schölkopf, B.

In Advances in Neural Information Processing Systems 25, pages: 674-682, (Editors: P Bartlett, FCN Pereira, CJC. Burges, L Bottou, and KQ Weinberger), Curran Associates Inc., 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Gradient Weights help Nonparametric Regressors

Kpotufe, S., Boularias, A.

In Advances in Neural Information Processing Systems 25, pages: 2870-2878, (Editors: P Bartlett and FCN Pereira and CJC. Burges and L Bottou and KQ Weinberger), 26th Annual Conference on Neural Information Processing Systems (NIPS), 2012 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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A Blind Deconvolution Approach for Pseudo CT Prediction from MR Image Pairs

Hirsch, M., Hofmann, M., Mantlik, F., Pichler, B., Schölkopf, B., Habeck, M.

In 19th IEEE International Conference on Image Processing (ICIP) , pages: 2953 -2956, IEEE, ICIP, 2012 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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A mixed model approach for joint genetic analysis of alternatively spliced transcript isoforms using RNA-Seq data

Rakitsch, B., Lippert, C., Topa, H., Borgwardt, KM., Honkela, A., Stegle, O.

In 2012 (inproceedings) Submitted

ei

Web [BibTex]

Web [BibTex]