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4182 results (BibTeX)

2005


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Composite adaptive control with locally weighted statistical learning

Nakanishi, J., Farrell, J. A., Schaal, S.

Neural Networks, 18(1):71-90, January 2005, clmc (article)

Abstract
This paper introduces a provably stable learning adaptive control framework with statistical learning. The proposed algorithm employs nonlinear function approximation with automatic growth of the learning network according to the nonlinearities and the working domain of the control system. The unknown function in the dynamical system is approximated by piecewise linear models using a nonparametric regression technique. Local models are allocated as necessary and their parameters are optimized on-line. Inspired by composite adaptive control methods, the proposed learning adaptive control algorithm uses both the tracking error and the estimation error to update the parameters. We first discuss statistical learning of nonlinear functions, and motivate our choice of the locally weighted learning framework. Second, we begin with a class of first order SISO systems for theoretical development of our learning adaptive control framework, and present a stability proof including a parameter projection method that is needed to avoid potential singularities during adaptation. Then, we generalize our adaptive controller to higher order SISO systems, and discuss further extension to MIMO problems. Finally, we evaluate our theoretical control framework in numerical simulations to illustrate the effectiveness of the proposed learning adaptive controller for rapid convergence and high accuracy of control.

am

link (url) [BibTex]

2005


link (url) [BibTex]


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Semi-supervised protein classification using cluster kernels

Weston, J., Leslie, C., Ie, E., Zhou, D., Elisseeff, A., Noble, W.

Bioinformatics, 21(15):3241-3247, 2005 (article)

ei

[BibTex]

[BibTex]


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Kernels: Regularization and Optimization

Ong, CS.

Biologische Kybernetik, The Australian National University, Canberra, Australia, 2005 (phdthesis)

ei

PDF GZIP [BibTex]

PDF GZIP [BibTex]


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Invariance of Neighborhood Relation under Input Space to Feature Space Mapping

Shin, H., Cho, S.

Pattern Recognition Letters, 26(6):707-718, 2005 (article)

Abstract
If the training pattern set is large, it takes a large memory and a long time to train support vector machine (SVM). Recently, we proposed neighborhood property based pattern selection algorithm (NPPS) which selects only the patterns that are likely to be near the decision boundary ahead of SVM training [Proc. of the 7th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), Lecture Notes in Artificial Intelligence (LNAI 2637), Seoul, Korea, pp. 376–387]. NPPS tries to identify those patterns that are likely to become support vectors in feature space. Preliminary reports show its effectiveness: SVM training time was reduced by two orders of magnitude with almost no loss in accuracy for various datasets. It has to be noted, however, that decision boundary of SVM and support vectors are all defined in feature space while NPPS described above operates in input space. If neighborhood relation in input space is not preserved in feature space, NPPS may not always be effective. In this paper, we sh ow that the neighborhood relation is invariant under input to feature space mapping. The result assures that the patterns selected by NPPS in input space are likely to be located near decision boundary in feature space.

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Intrinsic Dimensionality Estimation of Submanifolds in Euclidean space

Hein, M., Audibert, Y.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 289 , (Editors: De Raedt, L. , S. Wrobel), ICML Bonn, 2005 (inproceedings)

Abstract
We present a new method to estimate the intrinsic dimensionality of a submanifold M in Euclidean space from random samples. The method is based on the convergence rates of a certain U-statistic on the manifold. We solve at least partially the question of the choice of the scale of the data. Moreover the proposed method is easy to implement, can handle large data sets and performs very well even for small sample sizes. We compare the proposed method to two standard estimators on several artificial as well as real data sets.

ei

PDF [BibTex]

PDF [BibTex]


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Large Scale Genomic Sequence SVM Classifiers

Sonnenburg, S., Rätsch, G., Schölkopf, B.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 849-856, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, 2005 (inproceedings)

Abstract
In genomic sequence analysis tasks like splice site recognition or promoter identification, large amounts of training sequences are available, and indeed needed to achieve sufficiently high classification performances. In this work we study two recently proposed and successfully used kernels, namely the Spectrum kernel and the Weighted Degree kernel (WD). In particular, we suggest several extensions using Suffix Trees and modi cations of an SMO-like SVM training algorithm in order to accelerate the training of the SVMs and their evaluation on test sequences. Our simulations show that for the spectrum kernel and WD kernel, large scale SVM training can be accelerated by factors of 20 and 4 times, respectively, while using much less memory (e.g. no kernel caching). The evaluation on new sequences is often several thousand times faster using the new techniques (depending on the number of Support Vectors). Our method allows us to train on sets as large as one million sequences.

ei

PDF [BibTex]

PDF [BibTex]


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Joint Kernel Maps

Weston, J., Schölkopf, B., Bousquet, O.

In Proceedings of the 8th InternationalWork-Conference on Artificial Neural Networks, LNCS 3512, pages: 176-191, (Editors: J Cabestany and A Prieto and F Sandoval), Springer, Berlin Heidelberg, Germany, IWANN, 2005 (inproceedings)

Abstract
We develop a methodology for solving high dimensional dependency estimation problems between pairs of data types, which is viable in the case where the output of interest has very high dimension, e.g., thousands of dimensions. This is achieved by mapping the objects into continuous or discrete spaces, using joint kernels. Known correlations between input and output can be defined by such kernels, some of which can maintain linearity in the outputs to provide simple (closed form) pre-images. We provide examples of such kernels and empirical results.

ei

PostScript DOI [BibTex]

PostScript DOI [BibTex]


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Analysis of Some Methods for Reduced Rank Gaussian Process Regression

Quinonero Candela, J., Rasmussen, C.

In Switching and Learning in Feedback Systems, pages: 98-127, (Editors: Murray Smith, R. , R. Shorten), Springer, Berlin, Germany, European Summer School on Multi-Agent Control, 2005 (inproceedings)

Abstract
While there is strong motivation for using Gaussian Processes (GPs) due to their excellent performance in regression and classification problems, their computational complexity makes them impractical when the size of the training set exceeds a few thousand cases. This has motivated the recent proliferation of a number of cost-effective approximations to GPs, both for classification and for regression. In this paper we analyze one popular approximation to GPs for regression: the reduced rank approximation. While generally GPs are equivalent to infinite linear models, we show that Reduced Rank Gaussian Processes (RRGPs) are equivalent to finite sparse linear models. We also introduce the concept of degenerate GPs and show that they correspond to inappropriate priors. We show how to modify the RRGP to prevent it from being degenerate at test time. Training RRGPs consists both in learning the covariance function hyperparameters and the support set. We propose a method for learning hyperparameters for a given support set. We also review the Sparse Greedy GP (SGGP) approximation (Smola and Bartlett, 2001), which is a way of learning the support set for given hyperparameters based on approximating the posterior. We propose an alternative method to the SGGP that has better generalization capabilities. Finally we make experiments to compare the different ways of training a RRGP. We provide some Matlab code for learning RRGPs.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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Approximate Inference for Robust Gaussian Process Regression

Kuss, M., Pfingsten, T., Csato, L., Rasmussen, C.

(136), Max Planck Institute for Biological Cybernetics, Tübingen, Germany, 2005 (techreport)

Abstract
Gaussian process (GP) priors have been successfully used in non-parametric Bayesian regression and classification models. Inference can be performed analytically only for the regression model with Gaussian noise. For all other likelihood models inference is intractable and various approximation techniques have been proposed. In recent years expectation-propagation (EP) has been developed as a general method for approximate inference. This article provides a general summary of how expectation-propagation can be used for approximate inference in Gaussian process models. Furthermore we present a case study describing its implementation for a new robust variant of Gaussian process regression. To gain further insights into the quality of the EP approximation we present experiments in which we compare to results obtained by Markov chain Monte Carlo (MCMC) sampling.

ei

PDF [BibTex]

PDF [BibTex]


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Global image statistics of natural scenes

Drewes, J., Wichmann, F., Gegenfurtner, K.

Bioinspired Information Processing, 08, pages: 1, 2005 (poster)

ei

[BibTex]

[BibTex]


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Graph Kernels for Chemical Informatics

Ralaivola, L., Swamidass, J., Saigo, H., Baldi, P.

Neural Networks, 18(8):1093-1110, 2005 (article)

Abstract
Increased availability of large repositories of chemical compounds is creating new challenges and opportunities for the application of machine learning methods to problems in computational chemistry and chemical informatics. Because chemical compounds are often represented by the graph of their covalent bonds, machine learning methods in this domain must be capable of processing graphical structures with variable size. Here we first briefly review the literature on graph kernels and then introduce three new kernels (Tanimoto, MinMax, Hybrid) based on the idea of molecular fingerprints and counting labeled paths of depth up to d using depthfirst search from each possible vertex. The kernels are applied to three classification problems to predict mutagenicity, toxicity, and anti-cancer activity on three publicly available data sets. The kernels achieve performances at least comparable, and most often superior, to those previously reported in the literature reaching accuracies of 91.5% on the Mutag dataset, 65-67% on the PTC (Predictive Toxicology Challenge) dataset, and 72% on the NCI (National Cancer Institute) dataset. Properties and tradeoffs of these kernels, as well as other proposed kernels that leverage 1D or 3D representations of molecules, are briefly discussed.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Extended Gaussianization Method for Blind Separation of Post-Nonlinear Mixtures

Zhang, K., Chan, L.

Neural Computation, 17(2):425-452, 2005 (article)

Abstract
The linear mixture model has been investigated in most articles tackling the problem of blind source separation. Recently, several articles have addressed a more complex model: blind source separation (BSS) of post-nonlinear (PNL) mixtures. These mixtures are assumed to be generated by applying an unknown invertible nonlinear distortion to linear instantaneous mixtures of some independent sources. The gaussianization technique for BSS of PNL mixtures emerged based on the assumption that the distribution of the linear mixture of independent sources is gaussian. In this letter, we review the gaussianization method and then extend it to apply to PNL mixture in which the linear mixture is close to gaussian. Our proposed method approximates the linear mixture using the Cornish-Fisher expansion. We choose the mutual information as the independence measurement to develop a learning algorithm to separate PNL mixtures. This method provides better applicability and accuracy. We then discuss the sufficient condition for the method to be valid. The characteristics of the nonlinearity do not affect the performance of this method. With only a few parameters to tune, our algorithm has a comparatively low computation. Finally, we present experiments to illustrate the efficiency of our method.

ei

Web DOI [BibTex]


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Theory of Classification: A Survey of Some Recent Advances

Boucheron, S., Bousquet, O., Lugosi, G.

ESAIM: Probability and Statistics, 9, pages: 323 , 2005 (article)

Abstract
The last few years have witnessed important new developments in the theory and practice of pattern classification. We intend to survey some of the main new ideas that have lead to these important recent developments.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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From Graphs to Manifolds - Weak and Strong Pointwise Consistency of Graph Laplacians

Hein, M., Audibert, J., von Luxburg, U.

In Proceedings of the 18th Conference on Learning Theory (COLT), pages: 470-485, Conference on Learning Theory, 2005, Student Paper Award (inproceedings)

Abstract
In the machine learning community it is generally believed that graph Laplacians corresponding to a finite sample of data points converge to a continuous Laplace operator if the sample size increases. Even though this assertion serves as a justification for many Laplacian-based algorithms, so far only some aspects of this claim have been rigorously proved. In this paper we close this gap by establishing the strong pointwise consistency of a family of graph Laplacians with data-dependent weights to some weighted Laplace operator. Our investigation also includes the important case where the data lies on a submanifold of $R^d$.

ei

PDF [BibTex]

PDF [BibTex]


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Propagating Distributions on a Hypergraph by Dual Information Regularization

Tsuda, K.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 921 , (Editors: De Raedt, L. , S. Wrobel), ICML Bonn, 2005 (inproceedings)

Abstract
In the information regularization framework by Corduneanu and Jaakkola (2005), the distributions of labels are propagated on a hypergraph for semi-supervised learning. The learning is efficiently done by a Blahut-Arimoto-like two step algorithm, but, unfortunately, one of the steps cannot be solved in a closed form. In this paper, we propose a dual version of information regularization, which is considered as more natural in terms of information geometry. Our learning algorithm has two steps, each of which can be solved in a closed form. Also it can be naturally applied to exponential family distributions such as Gaussians. In experiments, our algorithm is applied to protein classification based on a metabolic network and known functional categories.

ei

[BibTex]

[BibTex]


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Support Vector Machines and Kernel Algorithms

Schölkopf, B., Smola, A.

In Encyclopedia of Biostatistics (2nd edition), Vol. 8, 8, pages: 5328-5335, (Editors: P Armitage and T Colton), John Wiley & Sons, NY USA, 2005 (inbook)

ei

[BibTex]

[BibTex]


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Moment Inequalities for Functions of Independent Random Variables

Boucheron, S., Bousquet, O., Lugosi, G., Massart, P.

To appear in Annals of Probability, 33, pages: 514-560, 2005 (article)

Abstract
A general method for obtaining moment inequalities for functions of independent random variables is presented. It is a generalization of the entropy method which has been used to derive concentration inequalities for such functions cite{BoLuMa01}, and is based on a generalized tensorization inequality due to Lata{l}a and Oleszkiewicz cite{LaOl00}. The new inequalities prove to be a versatile tool in a wide range of applications. We illustrate the power of the method by showing how it can be used to effortlessly re-derive classical inequalities including Rosenthal and Kahane-Khinchine-type inequalities for sums of independent random variables, moment inequalities for suprema of empirical processes, and moment inequalities for Rademacher chaos and $U$-statistics. Some of these corollaries are apparently new. In particular, we generalize Talagrands exponential inequality for Rademacher chaos of order two to any order. We also discuss applications for other complex functions of independent random variables, such as suprema of boolean polynomials which include, as special cases, subgraph counting problems in random graphs.

ei

PDF [BibTex]

PDF [BibTex]


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A Brain Computer Interface with Online Feedback based on Magnetoencephalography

Lal, T., Schröder, M., Hill, J., Preissl, H., Hinterberger, T., Mellinger, J., Bogdan, M., Rosenstiel, W., Hofmann, T., Birbaumer, N., Schölkopf, B.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 465-472, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, 2005 (inproceedings)

Abstract
The aim of this paper is to show that machine learning techniques can be used to derive a classifying function for human brain signal data measured by magnetoencephalography (MEG), for the use in a brain computer interface (BCI). This is especially helpful for evaluating quickly whether a BCI approach based on electroencephalography, on which training may be slower due to lower signalto- noise ratio, is likely to succeed. We apply recursive channel elimination and regularized SVMs to the experimental data of ten healthy subjects performing a motor imagery task. Four subjects were able to use a trained classifier together with a decision tree interface to write a short name. Further analysis gives evidence that the proposed imagination task is suboptimal for the possible extension to a multiclass interface. To the best of our knowledge this paper is the first working online BCI based on MEG recordings and is therefore a “proof of concept”.

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Healing the Relevance Vector Machine through Augmentation

Rasmussen, CE., Candela, JQ.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 689 , (Editors: De Raedt, L. , S. Wrobel), ICML, 2005 (inproceedings)

Abstract
The Relevance Vector Machine (RVM) is a sparse approximate Bayesian kernel method. It provides full predictive distributions for test cases. However, the predictive uncertainties have the unintuitive property, that emph{they get smaller the further you move away from the training cases}. We give a thorough analysis. Inspired by the analogy to non-degenerate Gaussian Processes, we suggest augmentation to solve the problem. The purpose of the resulting model, RVM*, is primarily to corroborate the theoretical and experimental analysis. Although RVM* could be used in practical applications, it is no longer a truly sparse model. Experiments show that sparsity comes at the expense of worse predictive distributions.

ei

PDF PostScript [BibTex]

PDF PostScript [BibTex]


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Visual perception I: Basic principles

Wagemans, J., Wichmann, F., de Beeck, H.

In Handbook of Cognition, pages: 3-47, (Editors: Lamberts, K. , R. Goldstone), Sage, London, 2005 (inbook)

ei

[BibTex]

[BibTex]


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Maximum-Margin Feature Combination for Detection and Categorization

BakIr, G., Wu, M., Eichhorn, J.

Max Planck Institute for Biological Cybernetics, Tübingen, Germany, 2005 (techreport)

Abstract
In this paper we are concerned with the optimal combination of features of possibly different types for detection and estimation tasks in machine vision. We propose to combine features such that the resulting classifier maximizes the margin between classes. In contrast to existing approaches which are non-convex and/or generative we propose to use a discriminative model leading to convex problem formulation and complexity control. Furthermore we assert that decision functions should not compare apples and oranges by comparing features of different types directly. Instead we propose to combine different similarity measures for each different feature type. Furthermore we argue that the question: ”Which feature type is more discriminative for task X?” is ill-posed and show empirically that the answer to this question might depend on the complexity of the decision function.

ei

PDF [BibTex]

PDF [BibTex]


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Kernel-Methods, Similarity, and Exemplar Theories of Categorization

Jäkel, F., Wichmann, F.

ASIC, 4, 2005 (poster)

Abstract
Kernel-methods are popular tools in machine learning and statistics that can be implemented in a simple feed-forward neural network. They have strong connections to several psychological theories. For example, Shepard‘s universal law of generalization can be given a kernel interpretation. This leads to an inner product and a metric on the psychological space that is different from the usual Minkowski norm. The metric has psychologically interesting properties: It is bounded from above and does not have additive segments. As categorization models often rely on Shepard‘s law as a model for psychological similarity some of them can be recast as kernel-methods. In particular, ALCOVE is shown to be closely related to kernel logistic regression. The relationship to the Generalized Context Model is also discussed. It is argued that functional analysis which is routinely used in machine learning provides valuable insights also for psychology.

ei

Web [BibTex]


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Rapid animal detection in natural scenes: critical features are local

Wichmann, F., Rosas, P., Gegenfurtner, K.

Experimentelle Psychologie. Beitr{\"a}ge zur 47. Tagung experimentell arbeitender Psychologen, 47, pages: 225, 2005 (poster)

ei

[BibTex]

[BibTex]


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Long Term Prediction of Product Quality in a Glass Manufacturing Process Using a Kernel Based Approach

Jung, T., Herrera, L., Schölkopf, B.

In Proceedings of the 8th International Work-Conferenceon Artificial Neural Networks (Computational Intelligence and Bioinspired Systems), Lecture Notes in Computer Science, Vol. 3512, LNCS 3512, pages: 960-967, (Editors: J Cabestany and A Prieto and F Sandoval), Springer, Berlin Heidelberg, Germany, IWANN, 2005 (inproceedings)

Abstract
In this paper we report the results obtained using a kernel-based approach to predict the temporal development of four response signals in the process control of a glass melting tank with 16 input parameters. The data set is a revised version1 from the modelling challenge in EUNITE-2003. The central difficulties are: large time-delays between changes in the inputs and the outputs, large number of data, and a general lack of knowledge about the relevant variables that intervene in the process. The methodology proposed here comprises Support Vector Machines (SVM) and Regularization Networks (RN). We use the idea of sparse approximation both as a means of regularization and as a means of reducing the computational complexity. Furthermore, we will use an incremental approach to add new training examples to the kernel-based method and efficiently update the current solution. This allows us to use a sophisticated learning scheme, where we iterate between prediction and training, with good computational efficiency and satisfactory results.

ei

DOI [BibTex]

DOI [BibTex]


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Object correspondence as a machine learning problem

Schölkopf, B., Steinke, F., Blanz, V.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 777-784, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, 2005 (inproceedings)

Abstract
We propose machine learning methods for the estimation of deformation fields that transform two given objects into each other, thereby establishing a dense point to point correspondence. The fields are computed using a modified support vector machine containing a penalty enforcing that points of one object will be mapped to ``similar‘‘ points on the other one. Our system, which contains little engineering or domain knowledge, delivers state of the art performance. We present application results including close to photorealistic morphs of 3D head models.

ei

PDF [BibTex]

PDF [BibTex]


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Towards a Statistical Theory of Clustering. Presented at the PASCAL workshop on clustering, London

von Luxburg, U., Ben-David, S.

Presented at the PASCAL workshop on clustering, London, 2005 (techreport)

Abstract
The goal of this paper is to discuss statistical aspects of clustering in a framework where the data to be clustered has been sampled from some unknown probability distribution. Firstly, the clustering of the data set should reveal some structure of the underlying data rather than model artifacts due to the random sampling process. Secondly, the more sample points we have, the more reliable the clustering should be. We discuss which methods can and cannot be used to tackle those problems. In particular we argue that generalization bounds as they are used in statistical learning theory of classification are unsuitable in a general clustering framework. We suggest that the main replacements of generalization bounds should be convergence proofs and stability considerations. This paper should be considered as a road map paper which identifies important questions and potentially fruitful directions for future research about statistical clustering. We do not attempt to present a complete statistical theory of clustering.

ei

PDF [BibTex]

PDF [BibTex]


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A novel representation of protein sequences for prediction of subcellular location using support vector machines

Matsuda, S., Vert, J., Saigo, H., Ueda, N., Toh, H., Akutsu, T.

Protein Science, 14, pages: 2804-2813, 2005 (article)

Abstract
As the number of complete genomes rapidly increases, accurate methods to automatically predict the subcellular location of proteins are increasingly useful to help their functional annotation. In order to improve the predictive accuracy of the many prediction methods developed to date, a novel representation of protein sequences is proposed. This representation involves local compositions of amino acids and twin amino acids, and local frequencies of distance between successive (basic, hydrophobic, and other) amino acids. For calculating the local features, each sequence is split into three parts: N-terminal, middle, and C-terminal. The N-terminal part is further divided into four regions to consider ambiguity in the length and position of signal sequences. We tested this representation with support vector machines on two data sets extracted from the SWISS-PROT database. Through fivefold cross-validation tests, overall accuracies of more than 87% and 91% were obtained for eukaryotic and prokaryotic proteins, respectively. It is concluded that considering the respective features in the N-terminal, middle, and C-terminal parts is helpful to predict the subcellular location. Keywords: subcellular location; signal sequence; amino acid composition; distance frequency; support vector machine; predictive accuracy

ei

Web DOI [BibTex]

Web DOI [BibTex]


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The human brain as large margin classifier

Graf, A., Wichmann, F., Bülthoff, H., Schölkopf, B.

Proceedings of the Computational & Systems Neuroscience Meeting (COSYNE), 2, pages: 1, 2005 (poster)

ei

[BibTex]

[BibTex]


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A tutorial on v-support vector machines

Chen, P., Lin, C., Schölkopf, B.

Applied Stochastic Models in Business and Industry, 21(2):111-136, 2005 (article)

Abstract
We briefly describe the main ideas of statistical learning theory, support vector machines (SVMs), and kernel feature spaces. We place particular emphasis on a description of the so-called -SVM, including details of the algorithm and its implementation, theoretical results, and practical applications. Copyright © 2005 John Wiley & Sons, Ltd.

ei

PDF [BibTex]

PDF [BibTex]


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Robust EEG Channel Selection Across Subjects for Brain Computer Interfaces

Schröder, M., Lal, T., Hinterberger, T., Bogdan, M., Hill, J., Birbaumer, N., Rosenstiel, W., Schölkopf, B.

EURASIP Journal on Applied Signal Processing, 2005(19, Special Issue: Trends in Brain Computer Interfaces):3103-3112, (Editors: Vesin, J. M., T. Ebrahimi), 2005 (article)

Abstract
Most EEG-based Brain Computer Interface (BCI) paradigms come along with specific electrode positions, e.g.~for a visual based BCI electrode positions close to the primary visual cortex are used. For new BCI paradigms it is usually not known where task relevant activity can be measured from the scalp. For individual subjects Lal et.~al showed that recording positions can be found without the use of prior knowledge about the paradigm used. However it remains unclear to what extend their method of Recursive Channel Elimination (RCE) can be generalized across subjects. In this paper we transfer channel rankings from a group of subjects to a new subject. For motor imagery tasks the results are promising, although cross-subject channel selection does not quite achieve the performance of channel selection on data of single subjects. Although the RCE method was not provided with prior knowledge about the mental task, channels that are well known to be important (from a physiological point of view) were consistently selected whereas task-irrelevant channels were reliably disregarded.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Implicit Surface Modelling as an Eigenvalue Problem

Walder, C., Chapelle, O., Schölkopf, B.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 937-944, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, 2005 (inproceedings)

Abstract
We discuss the problem of fitting an implicit shape model to a set of points sampled from a co-dimension one manifold of arbitrary topology. The method solves a non-convex optimisation problem in the embedding function that defines the implicit by way of its zero level set. By assuming that the solution is a mixture of radial basis functions of varying widths we attain the globally optimal solution by way of an equivalent eigenvalue problem, without using or constructing as an intermediate step the normal vectors of the manifold at each data point. We demonstrate the system on two and three dimensional data, with examples of missing data interpolation and set operations on the resultant shapes.

ei

PDF [BibTex]

PDF [BibTex]


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Approximate Bayesian Inference for Psychometric Functions using MCMC Sampling

Kuss, M., Jäkel, F., Wichmann, F.

(135), Max Planck Institute for Biological Cybernetics, Tübingen, Germany, 2005 (techreport)

Abstract
In psychophysical studies the psychometric function is used to model the relation between the physical stimulus intensity and the observer's ability to detect or discriminate between stimuli of different intensities. In this report we propose the use of Bayesian inference to extract the information contained in experimental data estimate the parameters of psychometric functions. Since Bayesian inference cannot be performed analytically we describe how a Markov chain Monte Carlo method can be used to generate samples from the posterior distribution over parameters. These samples are used to estimate Bayesian confidence intervals and other characteristics of the posterior distribution. In addition we discuss the parameterisation of psychometric functions and the role of prior distributions in the analysis. The proposed approach is exemplified using artificially generate d data and in a case study for real experimental data. Furthermore, we compare our approach with traditional methods based on maximum-likelihood parameter estimation combined with bootstrap techniques for confidence interval estimation. The appendix provides a description of an implementation for the R environment for statistical computing and provides the code for reproducing the results discussed in the experiment section.

ei

PDF [BibTex]

PDF [BibTex]


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Nonlinear optical spectroscopy of chiral molecules

Fischer, P, Hache, F

CHIRALITY, 17(8):421-437, 2005 (article)

Abstract
We review nonlinear optical processes that are specific to chiral molecules in solution and on surfaces. In contrast to conventional natural optical activity phenomena, which depend linearly on the electric field strength of the optical field, we discuss how optical processes that are nonlinear (quadratic, cubic, and quartic) functions of the electromagnetic field strength may probe optically active centers and chiral vibrations. We show that nonlinear techniques open entirely new ways of exploring chirality in chemical and biological systems: The cubic processes give rise to nonlinear circular dichroism and nonlinear optical rotation and make it possible to observe dynamic chiral processes at ultrafast time scales. The quadratic second-harmonic and sum-frequency-generation phenomena and the quartic processes may arise entirely in the electric-dipole approximation and do not require the use of circularly polarized light to detect chirality: They provide surface selectivity and their observables can be relatively much larger than in linear optical activity. These processes also give rise to the generation of light at a new color, and in liquids this frequency conversion only occurs if the solution is optically active. We survey recent chiral nonlinear optical experiments and give examples of their application to problems of biophysical interest. (C) 2005 Wiley-Liss, Inc.

pf

DOI [BibTex]

DOI [BibTex]


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A Flow-Based Approach to Vehicle Detection and Background Mosaicking in Airborne Video

Yalcin, H. C. R. B. M. J. H. M.

IEEE Conf. on Computer Vision and Pattern Recognition (CVPR), Video Proceedings,, pages: 1202, 2005 (patent)

ps

YouTube pdf [BibTex]

YouTube pdf [BibTex]


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Negative refraction at optical frequencies in nonmagnetic two-component molecular media

Chen, YF, Fischer, P, Wise, FW

PHYSICAL REVIEW LETTERS, 95(6), 2005 (article)

Abstract
There is significant motivation to develop media with negative refractive indices at optical frequencies, but efforts in this direction are hampered by the weakness of the magnetic response at such frequencies. We show theoretically that a nonmagnetic medium with two atomic or molecular constituents can exhibit a negative refractive index. A negative index is possible even when the real parts of both the permittivity and permeability are positive. This surprising result provides a route to isotropic negative-index media at optical frequencies.

pf

DOI [BibTex]

DOI [BibTex]


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Natural Actor-Critic

Peters, J., Vijayakumar, S., Schaal, S.

In Proceedings of the 16th European Conference on Machine Learning, 3720, pages: 280-291, (Editors: Gama, J.;Camacho, R.;Brazdil, P.;Jorge, A.;Torgo, L.), Springer, ECML, 2005, clmc (inproceedings)

Abstract
This paper investigates a novel model-free reinforcement learning architecture, the Natural Actor-Critic. The actor updates are based on stochastic policy gradients employing AmariÕs natural gradient approach, while the critic obtains both the natural policy gradient and additional parameters of a value function simultaneously by linear regres- sion. We show that actor improvements with natural policy gradients are particularly appealing as these are independent of coordinate frame of the chosen policy representation, and can be estimated more efficiently than regular policy gradients. The critic makes use of a special basis function parameterization motivated by the policy-gradient compatible function approximation. We show that several well-known reinforcement learning methods such as the original Actor-Critic and BradtkeÕs Linear Quadratic Q-Learning are in fact Natural Actor-Critic algorithms. Em- pirical evaluations illustrate the effectiveness of our techniques in com- parison to previous methods, and also demonstrate their applicability for learning control on an anthropomorphic robot arm.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Comparative experiments on task space control with redundancy resolution

Nakanishi, J., Cory, R., Mistry, M., Peters, J., Schaal, S.

In Proceedings of the 2005 IEEE/RSJ International Conference on Intelligent Robots and Systems, pages: 3901-3908, Edmonton, Alberta, Canada, Aug. 2-6, IROS, 2005, clmc (inproceedings)

Abstract
Understanding the principles of motor coordination with redundant degrees of freedom still remains a challenging problem, particularly for new research in highly redundant robots like humanoids. Even after more than a decade of research, task space control with redundacy resolution still remains an incompletely understood theoretical topic, and also lacks a larger body of thorough experimental investigation on complex robotic systems. This paper presents our first steps towards the development of a working redundancy resolution algorithm which is robust against modeling errors and unforeseen disturbances arising from contact forces. To gain a better understanding of the pros and cons of different approaches to redundancy resolution, we focus on a comparative empirical evaluation. First, we review several redundancy resolution schemes at the velocity, acceleration and torque levels presented in the literature in a common notational framework and also introduce some new variants of these previous approaches. Second, we present experimental comparisons of these approaches on a seven-degree-of-freedom anthropomorphic robot arm. Surprisingly, one of our simplest algorithms empirically demonstrates the best performance, despite, from a theoretical point, the algorithm does not share the same beauty as some of the other methods. Finally, we discuss practical properties of these control algorithms, particularly in light of inevitable modeling errors of the robot dynamics.

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


Thumb xl screen shot 2018 02 03 at 6.43.59 pm
Adaptation of Central Pattern Generators to Preexisting Mechanical Structure

Spröwitz, A.

Technische Universität Ilmenau, Ilmenau, 2005 (mastersthesis)

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[BibTex]

[BibTex]


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A model of smooth pursuit based on learning of the target dynamics using only retinal signals

Shibata, T., Tabata, H., Schaal, S., Kawato, M.

Neural Networks, 18, pages: 213-225, 2005, clmc (article)

Abstract
While the predictive nature of the primate smooth pursuit system has been evident through several behavioural and neurophysiological experiments, few models have attempted to explain these results comprehensively. The model we propose in this paper in line with previous models employing optimal control theory; however, we hypothesize two new issues: (1) the medical superior temporal (MST) area in the cerebral cortex implements a recurrent neural network (RNN) in order to predict the current or future target velocity, and (2) a forward model of the target motion is acquired by on-line learning. We use stimulation studies to demonstrate how our new model supports these hypotheses.

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link (url) [BibTex]

link (url) [BibTex]


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Linear and Nonlinear Estimation models applied to Hemodynamic Model

Theodorou, E.

Technical Report-2005-1, Computational Action and Vision Lab University of Minnesota, 2005, clmc (techreport)

Abstract
The relation between BOLD signal and neural activity is still poorly understood. The Gaussian Linear Model known as GLM is broadly used in many fMRI data analysis for recovering the underlying neural activity. Although GLM has been proved to be a really useful tool for analyzing fMRI data it can not be used for describing the complex biophysical process of neural metabolism. In this technical report we make use of a system of Stochastic Differential Equations that is based on Buxton model [1] for describing the underlying computational principles of hemodynamic process. Based on this SDE we built a Kalman Filter estimator so as to estimate the induced neural signal as well as the blood inflow under physiologic and sensor noise. The performance of Kalman Filter estimator is investigated under different physiologic noise characteristics and measurement frequencies.

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PDF [BibTex]

PDF [BibTex]


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Predicting EMG Data from M1 Neurons with Variational Bayesian Least Squares

Ting, J., D’Souza, A., Yamamoto, K., Yoshioka, T., Hoffman, D., Kakei, S., Sergio, L., Kalaska, J., Kawato, M., Strick, P., Schaal, S.

In Advances in Neural Information Processing Systems 18 (NIPS 2005), (Editors: Weiss, Y.;Schölkopf, B.;Platt, J.), Cambridge, MA: MIT Press, Vancouver, BC, Dec. 6-11, 2005, clmc (inproceedings)

Abstract
An increasing number of projects in neuroscience requires the statistical analysis of high dimensional data sets, as, for instance, in predicting behavior from neural firing, or in operating artificial devices from brain recordings in brain-machine interfaces. Linear analysis techniques remain prevalent in such cases, but classi-cal linear regression approaches are often numercially too fragile in high dimen-sions. In this paper, we address the question of whether EMG data collected from arm movements of monkeys can be faithfully reconstructed with linear ap-proaches from neural activity in primary motor cortex (M1). To achieve robust data analysis, we develop a full Bayesian approach to linear regression that automatically detects and excludes irrelevant features in the data, and regular-izes against overfitting. In comparison with ordinary least squares, stepwise re-gression, partial least squares, and a brute force combinatorial search for the most predictive input features in the data, we demonstrate that the new Bayesian method offers a superior mixture of characteristics in terms of regularization against overfitting, computational efficiency, and ease of use, demonstrating its potential as a drop-in replacement for other linear regression techniques. As neuroscientific results, our analyses demonstrate that EMG data can be well pre-dicted from M1 neurons, further opening the path for possible real-time inter-faces between brains and machines.

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link (url) [BibTex]

link (url) [BibTex]


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Modeling and testing of a biomimetic flagellar propulsion method for microscale biomedical swimming robots

Behkam, B., Sitti, M.

In Proceedings of Advanced Intelligent Mechatronics Conference, pages: 37-42, 2005 (inproceedings)

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Project Page [BibTex]

Project Page [BibTex]


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On the spatial statistics of optical flow

(Marr Prize, Honorable Mention)

Roth, S., Black, M. J.

In International Conf. on Computer Vision, pages: 42-49, 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Biologically inspired adhesion based surface climbing robots

Menon, C., Sitti, M.

In Robotics and Automation, 2005. ICRA 2005. Proceedings of the 2005 IEEE International Conference on, pages: 2715-2720, 2005 (inproceedings)

pi

[BibTex]

[BibTex]


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Claytronics: highly scalable communications, sensing, and actuation networks

Aksak, Burak, Bhat, Preethi Srinivas, Campbell, Jason, DeRosa, Michael, Funiak, Stanislav, Gibbons, Phillip B, Goldstein, Seth Copen, Guestrin, Carlos, Gupta, Ashish, Helfrich, Casey, others

In Proceedings of the 3rd international conference on Embedded networked sensor systems, pages: 299-299, 2005 (inproceedings)

pi

[BibTex]

[BibTex]


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Rapbid synchronization and accurate phase-locking of rhythmic motor primitives

Pongas, D., Billard, A., Schaal, S.

In IEEE International Conference on Intelligent Robots and Systems (IROS 2005), pages: 2911-2916, Edmonton, Alberta, Canada, Aug. 2-6, 2005, clmc (inproceedings)

Abstract
Rhythmic movement is ubiquitous in human and animal behavior, e.g., as in locomotion, dancing, swimming, chewing, scratching, music playing, etc. A particular feature of rhythmic movement in biology is the rapid synchronization and phase locking with other rhythmic events in the environment, for instance music or visual stimuli as in ball juggling. In traditional oscillator theories to rhythmic movement generation, synchronization with another signal is relatively slow, and it is not easy to achieve accurate phase locking with a particular feature of the driving stimulus. Using a recently developed framework of dynamic motor primitives, we demonstrate a novel algorithm for very rapid synchronizaton of a rhythmic movement pattern, which can phase lock any feature of the movement to any particulur event in the driving stimulus. As an example application, we demonstrate how an anthropomorphic robot can use imitation learning to acquire a complex rumming pattern and keep it synchronized with an external rhythm generator that changes its frequency over time.

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link (url) [BibTex]

link (url) [BibTex]


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Parametric and Non-Parametric approaches for nonlinear tracking of moving objects

Hidaka, Y, Theodorou, E.

Technical Report-2005-1, 2005, clmc (article)

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PDF [BibTex]

PDF [BibTex]


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Biologically Inspired Miniature Water Strider Robot.

Suhr, S. H., Song, Y. S., Lee, S. J., Sitti, M.

In Robotics: Science and Systems, pages: 319-326, 2005 (inproceedings)

pi

[BibTex]

[BibTex]


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Polymer micro/nanofiber fabrication using micro/nanopipettes

Nain, A. S., Amon, C., Sitti, M.

In Nanotechnology, 2005. 5th IEEE Conference on, pages: 366-369, 2005 (inproceedings)

pi

[BibTex]

[BibTex]


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Modeling neural population spiking activity with Gibbs distributions

Wood, F., Roth, S., Black, M. J.

In Advances in Neural Information Processing Systems 18, pages: 1537-1544, 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]