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2006


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Finding directional movement representations in motor cortical neural populations using nonlinear manifold learning

WorKim, S., Simeral, J., Jenkins, O., Donoghue, J., Black, M.

World Congress on Medical Physics and Biomedical Engineering 2006, Seoul, Korea, August 2006 (conference)

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[BibTex]

2006


[BibTex]


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A non-parametric Bayesian approach to spike sorting

Wood, F., Goldwater, S., Black, M. J.

In International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pages: 1165-1169, New York, NY, August 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Predicting 3D people from 2D pictures

(Best Paper)

Sigal, L., Black, M. J.

In Proc. IV Conf. on Articulated Motion and DeformableObjects (AMDO), LNCS 4069, pages: 185-195, July 2006 (inproceedings)

Abstract
We propose a hierarchical process for inferring the 3D pose of a person from monocular images. First we infer a learned view-based 2D body model from a single image using non-parametric belief propagation. This approach integrates information from bottom-up body-part proposal processes and deals with self-occlusion to compute distributions over limb poses. Then, we exploit a learned Mixture of Experts model to infer a distribution of 3D poses conditioned on 2D poses. This approach is more general than recent work on inferring 3D pose directly from silhouettes since the 2D body model provides a richer representation that includes the 2D joint angles and the poses of limbs that may be unobserved in the silhouette. We demonstrate the method in a laboratory setting where we evaluate the accuracy of the 3D poses against ground truth data. We also estimate 3D body pose in a monocular image sequence. The resulting 3D estimates are sufficiently accurate to serve as proposals for the Bayesian inference of 3D human motion over time

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pdf pdf from publisher Video [BibTex]

pdf pdf from publisher Video [BibTex]


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Specular flow and the recovery of surface structure

Roth, S., Black, M.

In Proc. IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, 2, pages: 1869-1876, New York, NY, June 2006 (inproceedings)

Abstract
In scenes containing specular objects, the image motion observed by a moving camera may be an intermixed combination of optical flow resulting from diffuse reflectance (diffuse flow) and specular reflection (specular flow). Here, with few assumptions, we formalize the notion of specular flow, show how it relates to the 3D structure of the world, and develop an algorithm for estimating scene structure from 2D image motion. Unlike previous work on isolated specular highlights we use two image frames and estimate the semi-dense flow arising from the specular reflections of textured scenes. We parametrically model the image motion of a quadratic surface patch viewed from a moving camera. The flow is modeled as a probabilistic mixture of diffuse and specular components and the 3D shape is recovered using an Expectation-Maximization algorithm. Rather than treating specular reflections as noise to be removed or ignored, we show that the specular flow provides additional constraints on scene geometry that improve estimation of 3D structure when compared with reconstruction from diffuse flow alone. We demonstrate this for a set of synthetic and real sequences of mixed specular-diffuse objects.

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pdf [BibTex]

pdf [BibTex]


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An adaptive appearance model approach for model-based articulated object tracking

Balan, A., Black, M. J.

In Proc. IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, 1, pages: 758-765, New York, NY, June 2006 (inproceedings)

Abstract
The detection and tracking of three-dimensional human body models has progressed rapidly but successful approaches typically rely on accurate foreground silhouettes obtained using background segmentation. There are many practical applications where such information is imprecise. Here we develop a new image likelihood function based on the visual appearance of the subject being tracked. We propose a robust, adaptive, appearance model based on the Wandering-Stable-Lost framework extended to the case of articulated body parts. The method models appearance using a mixture model that includes an adaptive template, frame-to-frame matching and an outlier process. We employ an annealed particle filtering algorithm for inference and take advantage of the 3D body model to predict self occlusion and improve pose estimation accuracy. Quantitative tracking results are presented for a walking sequence with a 180 degree turn, captured with four synchronized and calibrated cameras and containing significant appearance changes and self-occlusion in each view.

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pdf [BibTex]

pdf [BibTex]


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Measure locally, reason globally: Occlusion-sensitive articulated pose estimation

Sigal, L., Black, M. J.

In Proc. IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, 2, pages: 2041-2048, New York, NY, June 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Statistical analysis of the non-stationarity of neural population codes

Kim, S., Wood, F., Fellows, M., Donoghue, J. P., Black, M. J.

In BioRob 2006, The first IEEE / RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, pages: 295-299, Pisa, Italy, Febuary 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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How to choose the covariance for Gaussian process regression independently of the basis

Franz, M., Gehler, P.

In Proceedings of the Workshop Gaussian Processes in Practice, Workshop Gaussian Processes in Practice (GPIP), 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Chiral molecules split light: Reflection and refraction in a chiral liquid

Ghosh, A., Fischer, P.

PHYSICAL REVIEW LETTERS, 97(17), 2006, Featured highlight ‘Fundamental optical physics: Refraction’ Nature Photonics, Nov. 2006. (article)

Abstract
A light beam changes direction as it enters a liquid at an angle from another medium, such as air. Should the liquid contain molecules that lack mirror symmetry, then it has been predicted by Fresnel that the light beam will not only change direction, but will actually split into two separate beams with a small difference in the respective angles of refraction. Here we report the observation of this phenomenon. We also demonstrate that the angle of reflection does not equal the angle of incidence in a chiral medium. Unlike conventional optical rotation, which depends on the path-length through the sample, the reported reflection and refraction phenomena arise within a few wavelengths at the interface and thereby suggest a new approach to polarimetry that can be used in microfluidic volumes.

Featured highlight ‘Fundamental optical physics: Refraction’ Nature Photonics, Nov. 2006.

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DOI [BibTex]

DOI [BibTex]


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Direct chiral discrimination in NMR spectroscopy

Buckingham, A., Fischer, P.

CHEMICAL PHYSICS, 324(1):111-116, 2006 (article)

Abstract
Conventional nuclear magnetic resonance spectroscopy is unable to distinguish between the two mirror-image forms (enantiomers) of a chiral molecule. This is because the NMR spectrum is determined by the chemical shifts and spin-spin coupling constants which - in the absence of a chiral solvent - are identical for the two enantiomers. We discuss how chirality may nevertheless be directly detected in liquid-state NMR spectroscopy: In a chiral molecule, the rotating nuclear magnetic moment induces an electric dipole moment in the direction perpendicular to itself and to the permanent magnetic field of the spectrometer. We present computations of the precessing electric polarization following a pi/2 pulse. Our estimates indicate that the electric polarization should be detectable in favourable cases. We also predict that application of an electrostatic field induces a chirally sensitive magnetization oscillating in the direction of the permanent magnetic field. We show that the electric-field-perturbed chemical shift tensor, the nuclear magnetic shielding polarizability, underlies these chiral NMR effects. (c) 2005 Elsevier B.V. All rights reserved.

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DOI [BibTex]

DOI [BibTex]


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NONLINEAR OPTICAL PROPERTIES OF CHIRAL LIQUIDS Electric-dipolar pseudoscalars in nonlinear optics

Fischer, P., Champagne, B.

In NON-LINEAR OPTICAL PROPERTIES OF MATTER: FROM MOLECULES TO CONDENSED PHASES, 1, pages: 359-381, Challenges and Advances in Computational Chemistry and Physics, 2006 (incollection)

Abstract
We give all overview of linear and nonlinear optical processes that can be specific to chiral molecules in isotropic media. Specifically, we discuss the pseudoscalars that underlie nonlinear optical activity and chiral frequency conversion processes in fluids. We show that nonlinear optical techniques open entirely new ways of exploring chirality: Sum-frequency-generation (SFG) at second-order and BioCARS at fourth-order arise in the electric-dipole approximation and do not require circularly polarized light to detect chiral molecules in solution. Here the frequency conversion in itself is a measure of chirality. This is in contrast to natural optical activity phenomena which are based on the interference of radiation from induced oscillating electric and magnetic dipoles, and which are observed as a differential response to right and left circularly polarized light. We give examples from our SFG experiments in optically active solutions and show how the application of an additional static electric field to sum-frequency generation allows the absolute configuration of the chiral solute to be determined via all electric-dipolar process. Results from ab initio calculations of the SFG pseudoscalar are presented for a number of chiral molecules

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[BibTex]

[BibTex]


Thumb xl screen shot 2012 06 06 at 11.30.03 am
The rate adapting poisson model for information retrieval and object recognition

Gehler, P. V., Holub, A. D., Welling, M.

In Proceedings of the 23rd international conference on Machine learning, pages: 337-344, ICML ’06, ACM, New York, NY, USA, 2006 (inproceedings)

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project page pdf DOI [BibTex]

project page pdf DOI [BibTex]


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Ring-resonator-based frequency-domain optical activity measurements of a chiral liquid

Vollmer, F., Fischer, P.

OPTICS LETTERS, 31(4):453-455, 2006 (article)

Abstract
Chiral liquids rotate the plane of polarization of linearly polarized light and are therefore optically active. Here we show that optical rotation can be observed in the frequency domain. A chiral liquid introduced in a fiber-loop ring resonator that supports left and right circularly polarized modes gives rise to relative frequency shifts that are a direct measure of the liquid's circular birefringence and hence of its optical activity. The effect is in principle not diminished if the circumference of the ring is reduced. The technique is similarly applicable to refractive index and linear birefringence measurements. (c) 2006 Optical Society of America.

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DOI [BibTex]


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Sign of the refractive index in a gain medium with negative permittivity and permeability

Chen, Y., Fischer, P., Wise, F.

JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS, 23(1):45-50, 2006 (article)

Abstract
We show how the sign of the refractive index in any medium may be derived using a rigorous analysis based on Einstein causality. In particular, we consider left-handed materials, i.e., media that have negative permittivities and permeabilities at the frequency of interest. We find that the consideration of gain in such media can give rise to a positive refractive index. (c) 2006 Optical Society of America.

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DOI [BibTex]

DOI [BibTex]


Thumb xl screen shot 2012 06 06 at 11.31.38 am
Implicit Wiener Series, Part II: Regularised estimation

Gehler, P., Franz, M.

(148), Max Planck Institute, 2006 (techreport)

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pdf [BibTex]

pdf [BibTex]


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Tracking complex objects using graphical object models

Sigal, L., Zhu, Y., Comaniciu, D., Black, M. J.

In International Workshop on Complex Motion, LNCS 3417, pages: 223-234, Springer-Verlag, 2006 (inproceedings)

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pdf pdf from publisher [BibTex]

pdf pdf from publisher [BibTex]


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HumanEva: Synchronized video and motion capture dataset for evaluation of articulated human motion

Sigal, L., Black, M. J.

(CS-06-08), Brown University, Department of Computer Science, 2006 (techreport)

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pdf abstract [BibTex]

pdf abstract [BibTex]


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Bayesian population decoding of motor cortical activity using a Kalman filter

Wu, W., Gao, Y., Bienenstock, E., Donoghue, J. P., Black, M. J.

Neural Computation, 18(1):80-118, 2006 (article)

Abstract
Effective neural motor prostheses require a method for decoding neural activity representing desired movement. In particular, the accurate reconstruction of a continuous motion signal is necessary for the control of devices such as computer cursors, robots, or a patient's own paralyzed limbs. For such applications, we developed a real-time system that uses Bayesian inference techniques to estimate hand motion from the firing rates of multiple neurons. In this study, we used recordings that were previously made in the arm area of primary motor cortex in awake behaving monkeys using a chronically implanted multielectrode microarray. Bayesian inference involves computing the posterior probability of the hand motion conditioned on a sequence of observed firing rates; this is formulated in terms of the product of a likelihood and a prior. The likelihood term models the probability of firing rates given a particular hand motion. We found that a linear gaussian model could be used to approximate this likelihood and could be readily learned from a small amount of training data. The prior term defines a probabilistic model of hand kinematics and was also taken to be a linear gaussian model. Decoding was performed using a Kalman filter, which gives an efficient recursive method for Bayesian inference when the likelihood and prior are linear and gaussian. In off-line experiments, the Kalman filter reconstructions of hand trajectory were more accurate than previously reported results. The resulting decoding algorithm provides a principled probabilistic model of motor-cortical coding, decodes hand motion in real time, provides an estimate of uncertainty, and is straightforward to implement. Additionally the formulation unifies and extends previous models of neural coding while providing insights into the motor-cortical code.

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pdf preprint pdf from publisher abstract [BibTex]

pdf preprint pdf from publisher abstract [BibTex]


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Hierarchical Approach for Articulated 3D Pose-Estimation and Tracking (extended abstract)

Sigal, L., Black, M. J.

In Learning, Representation and Context for Human Sensing in Video Workshop (in conjunction with CVPR), 2006 (inproceedings)

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pdf poster [BibTex]

pdf poster [BibTex]


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Nonlinear physically-based models for decoding motor-cortical population activity

Shakhnarovich, G., Kim, S., Black, M. J.

In Advances in Neural Information Processing Systems 19, NIPS-2006, pages: 1257-1264, MIT Press, 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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A comparison of decoding models for imagined motion from human motor cortex

Kim, S., Simeral, J., Donoghue, J. P., Hocherberg, L. R., Friehs, G., Mukand, J. A., Chen, D., Black, M. J.

Program No. 256.11. 2006 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Atlanta, GA, 2006, Online (conference)

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[BibTex]

[BibTex]


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Denoising archival films using a learned Bayesian model

Moldovan, T. M., Roth, S., Black, M. J.

In Int. Conf. on Image Processing, ICIP, pages: 2641-2644, Atlanta, 2006 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Efficient belief propagation with learned higher-order Markov random fields

Lan, X., Roth, S., Huttenlocher, D., Black, M. J.

In European Conference on Computer Vision, ECCV, II, pages: 269-282, Graz, Austria, 2006 (inproceedings)

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pdf pdf from publisher [BibTex]

pdf pdf from publisher [BibTex]


Thumb xl screen shot 2012 06 06 at 11.15.02 am
Products of “Edge-perts”

Gehler, P., Welling, M.

In Advances in Neural Information Processing Systems 18, pages: 419-426, (Editors: Weiss, Y. and Sch"olkopf, B. and Platt, J.), MIT Press, Cambridge, MA, 2006 (incollection)

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pdf [BibTex]

pdf [BibTex]


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Modeling neural control of physically realistic movement

Shaknarovich, G., Kim, S., Donoghue, J. P., Hocherberg, L. R., Friehs, G., Mukand, J. A., Chen, D., Black, M. J.

Program No. 256.12. 2006 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Atlanta, GA, 2006, Online (conference)

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[BibTex]

[BibTex]

2005


Thumb xl ivc05
Representing cyclic human motion using functional analysis

Ormoneit, D., Black, M. J., Hastie, T., Kjellström, H.

Image and Vision Computing, 23(14):1264-1276, December 2005 (article)

Abstract
We present a robust automatic method for modeling cyclic 3D human motion such as walking using motion-capture data. The pose of the body is represented by a time-series of joint angles which are automatically segmented into a sequence of motion cycles. The mean and the principal components of these cycles are computed using a new algorithm that enforces smooth transitions between the cycles by operating in the Fourier domain. Key to this method is its ability to automatically deal with noise and missing data. A learned walking model is then exploited for Bayesian tracking of 3D human motion.

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pdf pdf from publisher DOI [BibTex]

2005


pdf pdf from publisher DOI [BibTex]


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A quantitative evaluation of video-based 3D person tracking

Balan, A. O., Sigal, L., Black, M. J.

In The Second Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance, VS-PETS, pages: 349-356, October 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Inferring attentional state and kinematics from motor cortical firing rates

Wood, F., Prabhat, , Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1544-1547, September 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Motor cortical decoding using an autoregressive moving average model

Fisher, J., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1469-1472, September 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


Thumb xl cvpr2005
Fields of Experts: A framework for learning image priors

Roth, S., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition, 2, pages: 860-867, June 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Nonlinear optical spectroscopy of chiral molecules

Fischer, P., Hache, F.

CHIRALITY, 17(8):421-437, 2005 (article)

Abstract
We review nonlinear optical processes that are specific to chiral molecules in solution and on surfaces. In contrast to conventional natural optical activity phenomena, which depend linearly on the electric field strength of the optical field, we discuss how optical processes that are nonlinear (quadratic, cubic, and quartic) functions of the electromagnetic field strength may probe optically active centers and chiral vibrations. We show that nonlinear techniques open entirely new ways of exploring chirality in chemical and biological systems: The cubic processes give rise to nonlinear circular dichroism and nonlinear optical rotation and make it possible to observe dynamic chiral processes at ultrafast time scales. The quadratic second-harmonic and sum-frequency-generation phenomena and the quartic processes may arise entirely in the electric-dipole approximation and do not require the use of circularly polarized light to detect chirality: They provide surface selectivity and their observables can be relatively much larger than in linear optical activity. These processes also give rise to the generation of light at a new color, and in liquids this frequency conversion only occurs if the solution is optically active. We survey recent chiral nonlinear optical experiments and give examples of their application to problems of biophysical interest. (C) 2005 Wiley-Liss, Inc.

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DOI [BibTex]

DOI [BibTex]


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A Flow-Based Approach to Vehicle Detection and Background Mosaicking in Airborne Video

Yalcin, H. C. R. B. M. J. H. M.

IEEE Conf. on Computer Vision and Pattern Recognition (CVPR), Video Proceedings,, pages: 1202, 2005 (patent)

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YouTube pdf [BibTex]

YouTube pdf [BibTex]


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Negative refraction at optical frequencies in nonmagnetic two-component molecular media

Chen, Y., Fischer, P., Wise, F.

PHYSICAL REVIEW LETTERS, 95(6), 2005 (article)

Abstract
There is significant motivation to develop media with negative refractive indices at optical frequencies, but efforts in this direction are hampered by the weakness of the magnetic response at such frequencies. We show theoretically that a nonmagnetic medium with two atomic or molecular constituents can exhibit a negative refractive index. A negative index is possible even when the real parts of both the permittivity and permeability are positive. This surprising result provides a route to isotropic negative-index media at optical frequencies.

pf

DOI [BibTex]

DOI [BibTex]


Thumb xl iccv05roth
On the spatial statistics of optical flow

(Marr Prize, Honorable Mention)

Roth, S., Black, M. J.

In International Conf. on Computer Vision, pages: 42-49, 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Modeling neural population spiking activity with Gibbs distributions

Wood, F., Roth, S., Black, M. J.

In Advances in Neural Information Processing Systems 18, pages: 1537-1544, 2005 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


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Energy-based models of motor cortical population activity

Wood, F., Black, M.

Program No. 689.20. 2005 Abstract Viewer/Itinerary Planner, Society for Neuroscience, Washington, DC, 2005 (conference)

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abstract [BibTex]

abstract [BibTex]

1992


Thumb xl arvo92
Psychophysical implications of temporal persistence in early vision: A computational account of representational momentum

Tarr, M. J., Black, M. J.

Investigative Ophthalmology and Visual Science Supplement, Vol. 36, No. 4, 33, pages: 1050, May 1992 (conference)

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abstract [BibTex]

1992


abstract [BibTex]


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Combining intensity and motion for incremental segmentation and tracking over long image sequences

Black, M. J.

In Proc. Second European Conf. on Computer Vision, ECCV-92, pages: 485-493, LNCS 588, Springer Verlag, May 1992 (inproceedings)

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pdf video abstract [BibTex]

pdf video abstract [BibTex]


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Robust Incremental Optical Flow

Black, M. J.

Yale University, Department of Computer Science, New Haven, CT, 1992, Research Report YALEU-DCS-RR-923 (phdthesis)

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pdf code [BibTex]

pdf code [BibTex]