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2019


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Sampling on Networks: Estimating Eigenvector Centrality on Incomplete Networks

Ruggeri, N., De Bacco, C.

International Conference on Complex Networks and Their Applications, November 2019 (article)

Abstract
We develop a new sampling method to estimate eigenvector centrality on incomplete networks. Our goalis to estimate this global centrality measure having at disposal a limited amount of data. This is the case inmany real-world scenarios where data collection is expensive, the network is too big for data storage capacityor only partial information is available. The sampling algorithm is theoretically grounded by results derivedfrom spectral approximation theory. We studied the problemon both synthetic and real data and tested theperformance comparing with traditional methods, such as random walk and uniform sampling. We show thatapproximations obtained from such methods are not always reliable and that our algorithm, while preservingcomputational scalability, improves performance under different error measures.

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Code Preprint pdf DOI [BibTex]

2019


Code Preprint pdf DOI [BibTex]


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Dynamics of beneficial epidemics

Berdahl, A., Brelsford, C., De Bacco, C., Dumas, M., Ferdinand, V., Grochow, J. A., nt Hébert-Dufresne, L., Kallus, Y., Kempes, C. P., Kolchinsky, A., Larremore, D. B., Libby, E., Power, E. A., A., S. C., Tracey, B. D.

Scientific Reports, 9, pages: 15093, October 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Color Constancy in Deep Neural Networks

Flachot, A., Schuett, H., Fleming, R. W., Wichmann, F. A., Gegenfurtner, K. R.

Journal of Vision, 19(10)(298), September 2019 (article)

Abstract
Journal of Vision 2019;19(10):298. doi: https://doi.org/10.1167/19.10.298.

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DOI [BibTex]

DOI [BibTex]


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Convolutional neural networks: A magic bullet for gravitational-wave detection?

Gebhard, T., Kilbertus, N., Harry, I., Schölkopf, B.

Physical Review D, 100(6):063015, American Physical Society, September 2019 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Data scarcity, robustness and extreme multi-label classification

Babbar, R., Schölkopf, B.

Machine Learning, 108(8):1329-1351, September 2019, Special Issue of the ECML PKDD 2019 Journal Track (article)

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DOI [BibTex]

DOI [BibTex]


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Automatic Segmentation and Labelling for Robot Table Tennis Time Series

Lutz, P.

Technical University Darmstadt, Germany, August 2019 (thesis)

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[BibTex]

[BibTex]


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SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species

Miladinovic, D., Muheim, C., Bauer, S., Spinnler, A., Noain, D., Bandarabadi, M., Gallusser, B., Krummenacher, G., Baumann, C., Adamantidis, A., Brown, S. A., Buhmann, J. M.

PLOS Computational Biology, 15(4):1-30, Public Library of Science, April 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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A 32-channel multi-coil setup optimized for human brain shimming at 9.4T

Aghaeifar, A., Zhou, J., Heule, R., Tabibian, B., Schölkopf, B., Jia, F., Zaitsev, M., Scheffler, K.

Magnetic Resonance in Medicine, 2019, (Early View) (article)

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DOI [BibTex]

DOI [BibTex]


Multidimensional Contrast Limited Adaptive Histogram Equalization
Multidimensional Contrast Limited Adaptive Histogram Equalization

Stimper, V., Bauer, S., Ernstorfer, R., Schölkopf, B., Xian, R. P.

IEEE Access, 7, pages: 165437-165447, 2019 (article)

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arXiv link (url) DOI [BibTex]

arXiv link (url) DOI [BibTex]


Tailored Magnetic Springs for Shape-Memory Alloy Actuated Mechanisms in Miniature Robots
Tailored Magnetic Springs for Shape-Memory Alloy Actuated Mechanisms in Miniature Robots

Woodward, M. A., Sitti, M.

IEEE Transactions on Robotics, 35, 2019 (article)

Abstract
Animals can incorporate large numbers of actuators because of the characteristics of muscles; whereas, robots cannot, as typical motors tend to be large, heavy, and inefficient. However, shape-memory alloys (SMA), materials that contract during heating because of change in their crystal structure, provide another option. SMA, though, is unidirectional and therefore requires an additional force to reset (extend) the actuator, which is typically provided by springs or antagonistic actuation. These strategies, however, tend to limit the actuator's work output and functionality as their force-displacement relationships typically produce increasing resistive force with limited variability. In contrast, magnetic springs-composed of permanent magnets, where the interaction force between magnets mimics a spring force-have much more variable force-displacement relationships and scale well with SMA. However, as of yet, no method for designing magnetic springs for SMA-actuators has been demonstrated. Therefore, in this paper, we present a new methodology to tailor magnetic springs to the characteristics of these actuators, with experimental results both for the device and robot-integrated SMA-actuators. We found magnetic building blocks, based on sets of permanent magnets, which are well-suited to SMAs and have the potential to incorporate features such as holding force, state transitioning, friction minimization, auto-alignment, and self-mounting. We show magnetic springs that vary by more than 3 N in 750 $\mu$m and two SMA-actuated devices that allow the MultiMo-Bat to reach heights of up to 4.5 m without, and 3.6 m with, integrated gliding airfoils. Our results demonstrate the potential of this methodology to add previously impossible functionality to smart material actuators. We anticipate this methodology will inspire broader consideration of the use of magnetic springs in miniature robots and further study of the potential of tailored magnetic springs throughout mechanical systems.

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DOI [BibTex]


Thrust and Hydrodynamic Efficiency of the Bundled Flagella
Thrust and Hydrodynamic Efficiency of the Bundled Flagella

Danis, U., Rasooli, R., Chen, C., Dur, O., Sitti, M., Pekkan, K.

Micromachines, 10, 2019 (article)

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[BibTex]

[BibTex]


Microrobotics and Microorganisms: Biohybrid Autonomous Cellular Robots
Microrobotics and Microorganisms: Biohybrid Autonomous Cellular Robots

Alapan, Y., Yasa, O., Yigit, B., Yasa, I. C., Erkoc, P., Sitti, M.

Annual Review of Control, Robotics, and Autonomous Systems, 2019 (article)

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[BibTex]

[BibTex]


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X-ray Optics Fabrication Using Unorthodox Approaches

Sanli, U., Baluktsian, M., Ceylan, H., Sitti, M., Weigand, M., Schütz, G., Keskinbora, K.

Bulletin of the American Physical Society, APS, 2019 (article)

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[BibTex]

[BibTex]


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TD-regularized actor-critic methods

Parisi, S., Tangkaratt, V., Peters, J., Khan, M. E.

Machine Learning, 108(8):1467-1501, (Editors: Karsten Borgwardt, Po-Ling Loh, Evimaria Terzi, and Antti Ukkonen), 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Probabilistic solutions to ordinary differential equations as nonlinear Bayesian filtering: a new perspective

Tronarp, F., Kersting, H., Särkkä, S. H. P.

Statistics and Computing, 29(6):1297-1315, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


Nitrogen doped carbon quantum dots demonstrate no toxicity under in vitro conditions in a cervical cell line and in vivo in Swiss albino mice
Nitrogen doped carbon quantum dots demonstrate no toxicity under in vitro conditions in a cervical cell line and in vivo in Swiss albino mice

Singh, V., Kashyap, S., Yadav, U., Srivastava, A., Singh, A. V., Singh, R. K., Singh, S. K., Saxena, P. S.

Toxicology research, 8, Oxford University Press, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


Learning to Control Highly Accelerated Ballistic Movements on Muscular Robots
Learning to Control Highly Accelerated Ballistic Movements on Muscular Robots

Büchler, D., Calandra, R., Peters, J.

2019 (article) Submitted

Abstract
High-speed and high-acceleration movements are inherently hard to control. Applying learning to the control of such motions on anthropomorphic robot arms can improve the accuracy of the control but might damage the system. The inherent exploration of learning approaches can lead to instabilities and the robot reaching joint limits at high speeds. Having hardware that enables safe exploration of high-speed and high-acceleration movements is therefore desirable. To address this issue, we propose to use robots actuated by Pneumatic Artificial Muscles (PAMs). In this paper, we present a four degrees of freedom (DoFs) robot arm that reaches high joint angle accelerations of up to 28000 °/s^2 while avoiding dangerous joint limits thanks to the antagonistic actuation and limits on the air pressure ranges. With this robot arm, we are able to tune control parameters using Bayesian optimization directly on the hardware without additional safety considerations. The achieved tracking performance on a fast trajectory exceeds previous results on comparable PAM-driven robots. We also show that our system can be controlled well on slow trajectories with PID controllers due to careful construction considerations such as minimal bending of cables, lightweight kinematics and minimal contact between PAMs and PAMs with the links. Finally, we propose a novel technique to control the the co-contraction of antagonistic muscle pairs. Experimental results illustrate that choosing the optimal co-contraction level is vital to reach better tracking performance. Through the use of PAM-driven robots and learning, we do a small step towards the future development of robots capable of more human-like motions.

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Arxiv Video [BibTex]


Multifarious Transit Gates for Programmable Delivery of Bio‐functionalized Matters
Multifarious Transit Gates for Programmable Delivery of Bio‐functionalized Matters

Hu, X., Torati, S. R., Kim, H., Yoon, J., Lim, B., Kim, K., Sitti, M., Kim, C.

Small, Wiley Online Library, 2019 (article)

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[BibTex]

[BibTex]


Multi-functional soft-bodied jellyfish-like swimming
Multi-functional soft-bodied jellyfish-like swimming

Ren, Z., Hu, W., Dong, X., Sitti, M.

Nature communications, 10, 2019 (article)

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[BibTex]


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Welcome to Progress in Biomedical Engineering

Sitti, M.

Progress in Biomedical Engineering, 1, IOP Publishing, 2019 (article)

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[BibTex]

[BibTex]


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Robustifying Independent Component Analysis by Adjusting for Group-Wise Stationary Noise

Pfister*, N., Weichwald*, S., Bühlmann, P., Schölkopf, B.

Journal of Machine Learning Research, 20(147):1-50, 2019, *equal contribution (article)

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ArXiv Code Project page PDF link (url) Project Page Project Page [BibTex]

ArXiv Code Project page PDF link (url) Project Page Project Page [BibTex]


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Enhancing Human Learning via Spaced Repetition Optimization

Tabibian, B., Upadhyay, U., De, A., Zarezade, A., Schölkopf, B., Gomez Rodriguez, M.

Proceedings of the National Academy of Sciences, 116(10):3988-3993, National Academy of Sciences, 2019 (article)

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link (url) DOI Project Page Project Page [BibTex]

link (url) DOI Project Page Project Page [BibTex]


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Entropic Regularization of Markov Decision Processes

Belousov, B., Peters, J.

Entropy, 21(7):674, 2019 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


The near and far of a pair of magnetic capillary disks
The near and far of a pair of magnetic capillary disks

Koens, L., Wang, W., Sitti, M., Lauga, E.

Soft Matter, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Searchers adjust their eye-movement dynamics to target characteristics in natural scenes

Rothkegel, L., Schütt, H., Trukenbrod, H., Wichmann, F. A., Engbert, R.

Scientific Reports, 9(1635), 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Spatial statistics for gaze patterns in scene viewing: Effects of repeated viewing

Trukenbrod, H. A., Barthelmé, S., Wichmann, F. A., Engbert, R.

Journal of Vision, 19(6):19, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


Aerial robot control in close proximity to ceiling: A force estimation-based nonlinear mpc
Aerial robot control in close proximity to ceiling: A force estimation-based nonlinear mpc

Kocer, B. B., Tiryaki, M. E., Pratama, M., Tjahjowidodo, T., Seet, G. G. L.

arXiv preprint arXiv:1907.13594, 2019 (article)

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[BibTex]

[BibTex]


Mechanics of a pressure-controlled adhesive membrane for soft robotic gripping on curved surfaces
Mechanics of a pressure-controlled adhesive membrane for soft robotic gripping on curved surfaces

Song, S., Drotlef, D., Paik, J., Majidi, C., Sitti, M.

Extreme Mechanics Letters, Elsevier, 2019 (article)

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[BibTex]


Multifunctional and biodegradable self-propelled protein motors
Multifunctional and biodegradable self-propelled protein motors

Pena-Francesch, A., Giltinan, J., Sitti, M.

Nature communications, 10, Nature Publishing Group, 2019 (article)

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[BibTex]

[BibTex]


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Quantum mean embedding of probability distributions

Kübler, J. M., Muandet, K., Schölkopf, B.

Physical Review Research, 1(3):033159, American Physical Society, 2019 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


Review of emerging concepts in nanotoxicology: opportunities and challenges for safer nanomaterial design
Review of emerging concepts in nanotoxicology: opportunities and challenges for safer nanomaterial design

Singh, A. V., Laux, P., Luch, A., Sudrik, C., Wiehr, S., Wild, A., Santamauro, G., Bill, J., Sitti, M.

Toxicology Mechanisms and Methods, 2019 (article)

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[BibTex]

[BibTex]


Graphene oxide synergistically enhances antibiotic efficacy in Vancomycin resistance Staphylococcus aureus
Graphene oxide synergistically enhances antibiotic efficacy in Vancomycin resistance Staphylococcus aureus

Singh, V., Kumar, V., Kashyap, S., Singh, A. V., Kishore, V., Sitti, M., Saxena, P. S., Srivastava, A.

ACS Applied Bio Materials, ACS Publications, 2019 (article)

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[BibTex]

[BibTex]


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Co-Contraction facilitates Body Stiffness Modulation during Swimming with Sensory Feedback in a Soft Biorobotic Physical Model

Jusufi, A., Vogt, D., Wood, R. J.

Integrative and Comparative Biology, 59(Supplement 1):E116-E116, Society of Integrative and Comparative Biology, McLean, VA, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Inferring causation from time series with perspectives in Earth system sciences

Runge, J., Bathiany, S., Bollt, E., Camps-Valls, G., Coumou, D., Deyle, E., Glymour, C., Kretschmer, M., Mahecha, M., Munoz-Mari, J., van Nes, E., Peters, J., Quax, R., Reichstein, M., Scheffer, M., Schölkopf, B., Spirtes, P., Sugihara, G., Sun, J., Zhang, K., Zscheischler, J.

Nature Communications, 10(2553), 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Analysis of cause-effect inference by comparing regression errors

Blöbaum, P., Janzing, D., Washio, T., Shimizu, S., Schölkopf, B.

PeerJ Computer Science, 5, pages: e169, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Learning Intention Aware Online Adaptation of Movement Primitives

Koert, D., Pajarinen, J., Schotschneider, A., Trick, S., Rothkopf, C., Peters, J.

IEEE Robotics and Automation Letters, 4(4):3719-3726, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Spread-spectrum magnetic resonance imaging

Scheffler, K., Loktyushin, A., Bause, J., Aghaeifar, A., Steffen, T., Schölkopf, B.

Magnetic Resonance in Medicine, 82(3):877-885, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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How Cognitive Models of Human Body Experience Might Push Robotics

Schürmann, T., Mohler, B. J., Peters, J., Beckerle, P.

Frontiers in Neurorobotics, 13(14), 2019 (article)

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DOI [BibTex]

DOI [BibTex]


In Vivo Biocompatibility of Electrospun Biodegradable Dual Carrier (Antibiotic + Growth Factor) in a Mouse Model-Implications for Rapid Wound Healing
In Vivo Biocompatibility of Electrospun Biodegradable Dual Carrier (Antibiotic + Growth Factor) in a Mouse Model-Implications for Rapid Wound Healing

Dwivedi, C., Pandey, H., Pandey, A. C., Patil, S., Ramteke, P. W., Laux, P., Luch, A., Singh, A. V.

Pharmaceutics, Multidisciplinary Digital Publishing Institute, 2019 (article)

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[BibTex]

[BibTex]


Cancer-selective nanoparticles for combinatorial siRNA delivery to primary human GBM in vitro and in vivo
Cancer-selective nanoparticles for combinatorial siRNA delivery to primary human GBM in vitro and in vivo

Kozielski, K. L., Ruiz-Valls, A., Tzeng, S. Y., Guerrero-Cázares, H., Rui, Y., Li, Y., Vaughan, H. J., Gionet-Gonzales, M., Vantucci, C., Kim, J., others,

Biomaterials, 209, Elsevier, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


ENGINEERING Bio-inspired robotic collectives
ENGINEERING Bio-inspired robotic collectives

Sitti, M.

Nature, 567, pages: 314-315, Macmillan Publishers Ltd., London, England, 2019 (article)

pi

[BibTex]

[BibTex]


Shape-encoded dynamic assembly of mobile micromachines
Shape-encoded dynamic assembly of mobile micromachines

Alapan, Y., Yigit, B., Beker, O., Demirörs, A. F., Sitti, M.

Nature, 18, 2019 (article)

pi

[BibTex]

[BibTex]


Peptide-Induced Biomineralization of Tin Oxide (SnO2) Nanoparticles for Antibacterial Applications
Peptide-Induced Biomineralization of Tin Oxide (SnO2) Nanoparticles for Antibacterial Applications

Singh, A. V., Jahnke, T., Xiao, Y., Wang, S., Yu, Y., David, H., Richter, G., Laux, P., Luch, A., Srivastava, A., Saxena, P. S., Bill, J., Sitti, M.

Journal of nanoscience and nanotechnology, 19, American Scientific Publishers, 2019 (article)

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[BibTex]

[BibTex]