222 results (BibTeX)

2008


Probabilistic Roadmap Method and Real Time Gait Changing Technique Implementation for Travel Time Optimization on a Designed Six-legged Robot

Ahmad, A., Dhang, N.

In pages: 1-5, 39th International Symposium on Robotics (ISR), oct 2008 (inproceedings)

Abstract
This paper presents design and development of a six legged robot with a total of 12 degrees of freedom, two in each limb and then an implementation of 'obstacle and undulated terrain-based' probabilistic roadmap method for motion planning of this hexaped which is able to negotiate large undulations as obstacles. The novelty in this implementation is that, it doesnt require the complete view of the robot's configuration space at any given time during the traversal. It generates a map of the area that is in visibility range and finds the best suitable point in that field of view to make it as the next node of the algorithm. A particular category of undulations which are small enough are automatically 'run-over' as a part of the terrain and not considered as obstacles. The traversal between the nodes is optimized by taking the shortest path and the most optimum gait at that instance which the hexaped can assume. This is again a novel approach to have a real time gait changing technique to optimize the travel time. The hexaped limb can swing in the robot's X-Y plane and the lower link of the limb can move in robot's Z plane by an implementation of a four-bar mechanism. A GUI based server 'Yellow Ladybird' eventually which is the name of the hexaped, is made for real time monitoring and communicating to it the final destination co-ordinates.

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link (url) [BibTex]

2008



Interactive images

Schölkopf, B., Toyama, K., Uyttendaele, M.

United States Patent, No 7444016, October 2008 (patent)

ei

[BibTex]

[BibTex]


Methods for feature selection in a learning machine

Weston, J., Elisseeff, A., Schölkopf, B., Pérez-Cruz, F.

United States Patent, No 7318051, January 2008 (patent)

ei

[BibTex]

[BibTex]


Pattern detection using reduced set vectors

Blake, A., Romdhani, S., Schölkopf, B., Torr, P.

United States Patent, No 7391908, June 2008 (patent)

ei

[BibTex]

[BibTex]


Interactive images

Schölkopf, B., Toyama, K., Uyttendaele, M.

United States Patent, No 7444015, October 2008 (patent)

ei

[BibTex]

[BibTex]


Interactive images

Schölkopf, B., Toyama, K., Uyttendaele, M.

United States Patent, No 7421115, September 2008 (patent)

ei

[BibTex]

[BibTex]


Kernels and methods for selecting kernels for use in learning machines

Bartlett, P., Elisseeff, A., Schölkopf, B.

United States Patent, No 7353215, April 2008 (patent)

ei

[BibTex]

[BibTex]


Passive compliant quadruped robot using central pattern generators for locomotion control

Rutishauser, S., Sproewitz, A., Righetti, L., Ijspeert, A.

In 2008 IEEE International Conference on Biomedical Robotics and Biomechatronics, pages: 710-715, 2008 (inproceedings)

am

[BibTex]

[BibTex]


Experimental Study of Limit Cycle and Chaotic Controllers for the Locomotion of Centipede Robots

Matthey, L., Righetti, L., Ijspeert, A.

In Proceedings of the 2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, pages: 1860-1865, 2008 (inproceedings)

am

[BibTex]

[BibTex]


A Dynamical System for Online Learning of Periodic Movements of Unknown Waveform and Frequency

Gams, A., Righetti, L., Ijspeert, A., Lenarčič, J.

In 2008 IEEE International Conference on Biomedical Robotics and Biomechatronics, pages: 85-90, 2008 (inproceedings)

am

[BibTex]

[BibTex]


Adaptive frequency oscillators and applications

Righetti, L., Buchli, J., Ijspeert, A.

In Proceedings of the 1st International Workshop on Nonlinear Dynamics and Synchronization, 2008 (inproceedings)

am

[BibTex]

[BibTex]


Quadruped locomotion: from infants crawling to the design of pattern generators for quadruped robots

Righetti, L., Ijspeert, A.

In Proceedings of the 4th International Symposium on Adaptive Motion in Animals and Machines – AMAM 2008, 2008 (inproceedings)

am

[BibTex]

[BibTex]


A modular bio-inspired architecture for movement generation for the infant-like robot iCub

Degallier, S., Righetti, L., Natale, L., Nori, F., Metta, G., Ijspeert, A.

In 2008 IEEE International Conference on Biomedical Robotics and Biomechatronics, pages: 795-800, 2008 (inproceedings)

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[BibTex]

[BibTex]


Frequency analysis with coupled nonlinear oscillators

Buchli, J., Righetti, L., Ijspeert, A.

Physica D, 237(13):1705-1718, 2008 (article)

am

[BibTex]

[BibTex]


Pattern generators with sensory feedback for the control of quadruped locomotion

Righetti, L., Ijspeert, A.

2008 IEEE International Conference on Robotics and Automation, pages: 819-824, 2008 (proceedings)

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


Thumb md trajectory nips
Nonrigid Structure from Motion in Trajectory Space

Akhter, I., Sheikh, Y., Khan, S., Kanade, T.

In Neural Information Processing Systems, 1(2):41-48, 2008 (inproceedings)

Abstract
Existing approaches to nonrigid structure from motion assume that the instantaneous 3D shape of a deforming object is a linear combination of basis shapes, which have to be estimated anew for each video sequence. In contrast, we propose that the evolving 3D structure be described by a linear combination of basis trajectories. The principal advantage of this approach is that we do not need to estimate any basis vectors during computation. We show that generic bases over trajectories, such as the Discrete Cosine Transform (DCT) basis, can be used to compactly describe most real motions. This results in a significant reduction in unknowns, and corresponding stability in estimation. We report empirical performance, quantitatively using motion capture data, and qualitatively on several video sequences exhibiting nonrigid motions including piece-wise rigid motion, partially nonrigid motion (such as a facial expression), and highly nonrigid motion (such as a person dancing).

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pdf project page [BibTex]

pdf project page [BibTex]


Neural activity in the motor cortex of humans with tetraplegia

Donoghue, J., Simeral, J., Black, M. J., Kim, S., Truccolo, W., Hochberg, L.

AREADNE Research in Encoding And Decoding of Neural Ensembles, June, Santorini, Greece, 2008 (conference)

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[BibTex]

[BibTex]


Decoding of reach and grasp from MI population spiking activity using a low-dimensional model of hand and arm posture

Yadollahpour, P., Shakhnarovich, G., Vargas-Irwin, C., Donoghue, J., Black, M. J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

ps

[BibTex]

[BibTex]


More than two years of intracortically-based cursor control via a neural interface system

Hochberg, L., Simeral, J., Kim, S., Stein, J., Friehs, G., Black, M. J., Donoghue, J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

ps

[BibTex]

[BibTex]


Tuning analysis of motor cortical neurons in a person with paralysis during performance of visually instructed cursor control tasks

Kim, S., Simeral, J., Hochberg, L., Truccolo, W., Donoghue, J., Friehs, G., Black, M. J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

ps

[BibTex]

[BibTex]


Reconstructing reach and grasp actions using neural population activity from Primary Motor Cortex

Vargas-Irwin, C., Yadollahpour, P., Shakhnarovich, G., Black, M. J., Donoghue, J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

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[BibTex]

[BibTex]


Thumb md thumb screen shot 2012 10 06 at 12.29.08 pm
Visual Recognition of Grasps for Human-to-Robot Mapping

Kjellström, H., Romero, J., Kragic, D.

In IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS, pages: 3192-3199, 2008 (inproceedings)

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Pdf [BibTex]

Pdf [BibTex]


Thumb md thumb screen shot 2012 10 06 at 12.28.24 pm
Simultaneous Visual Recognition of Manipulation Actions and Manipulated Objects

Kjellström, H., Romero, J., Martinez, D., Kragic, D.

In European Conference on Computer Vision, ECCV, pages: 336-349, 2008 (inproceedings)

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Pdf [BibTex]

Pdf [BibTex]


Thumb md thumb screen shot 2012 10 06 at 12.23.39 pm
Dynamic time warping for binocular hand tracking and reconstruction

Romero, J., Kragic, D., Kyrki, V., Argyros, A.

In IEEE International Conference on Robotics and Automation,ICRA, pages: 2289 -2294, May 2008 (inproceedings)

ps

Pdf [BibTex]

Pdf [BibTex]


Thumb md octave
GNU Octave Manual Version 3

John W. Eaton., David Bateman., Soren Hauberg.

Network Theory Ltd., October 2008 (book)

ps

Publishers site GNU Octave [BibTex]

Publishers site GNU Octave [BibTex]


Thumb md jmiv08theater
An Efficient Algorithm for Modelling Duration in Hidden Markov Models, with a Dramatic Application

Soren Hauberg., Jakob Sloth.

Journal of Mathematical Imaging and Vision, 31, pages: 165-170, Springer Netherlands, 2008 (article)

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Publishers site Paper site PDF [BibTex]

Publishers site Paper site PDF [BibTex]


Thumb md jmiv08brownian
Brownian Warps for Non-Rigid Registration

Mads Nielsen., Peter Johansen., Andrew Jackson., Benny Lautrup., Soren Hauberg.

Journal of Mathematical Imaging and Vision, 31, pages: 221-231, Springer Netherlands, 2008 (article)

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Publishers site PDF [BibTex]

Publishers site PDF [BibTex]


Thumb md screen shot 2012 06 06 at 11.28.04 am
Infinite Kernel Learning

Gehler, P., Nowozin, S.

In Proceedings of NIPS 2008 Workshop on "Kernel Learning: Automatic Selection of Optimal Kernels", 2008 (inproceedings)

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project page pdf [BibTex]

project page pdf [BibTex]


Thumb md screen shot 2012 06 06 at 11.28.04 am
Infinite Kernel Learning

Gehler, P., Nowozin, S.

(178), Max Planck Institute, octomber 2008 (techreport)

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project page pdf [BibTex]

project page pdf [BibTex]


Thumb md teaser
Bayesian Color Constancy Revisited

Gehler, P., Rother, C., Blake, A., Minka, T., Sharp, T.

In IEEE Computer Society Conference on Computer Vision and Pattern Recognition, CVPR, June 2008, http://dx.doi.org/10.1109/CVPR.2008.4587765 (inproceedings)

ei

website+code+data pdf [BibTex]

website+code+data pdf [BibTex]


Thumb md woodtr
Incremental nonparametric Bayesian regression

Wood, F., Grollman, D., Heller, K., Jenkins, O., Black, M. J.

(CS-08-07), Brown University, Department of Computer Science, 2008 (techreport)

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pdf [BibTex]

pdf [BibTex]


Thumb md pointclickimagesmall2
Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia

(J. Neural Engineering Highlights of 2008 Collection)

Kim, S., Simeral, J., Hochberg, L., Donoghue, J., Black, M. J.

J. Neural Engineering, 5, pages: 455–476, 2008 (article)

Abstract
Computer-mediated connections between human motor cortical neurons and assistive devices promise to improve or restore lost function in people with paralysis. Recently, a pilot clinical study of an intracortical neural interface system demonstrated that a tetraplegic human was able to obtain continuous two-dimensional control of a computer cursor using neural activity recorded from his motor cortex. This control, however, was not sufficiently accurate for reliable use in many common computer control tasks. Here, we studied several central design choices for such a system including the kinematic representation for cursor movement, the decoding method that translates neuronal ensemble spiking activity into a control signal and the cursor control task used during training for optimizing the parameters of the decoding method. In two tetraplegic participants, we found that controlling a cursor’s velocity resulted in more accurate closed-loop control than controlling its position directly and that cursor velocity control was achieved more rapidly than position control. Control quality was further improved over conventional linear filters by using a probabilistic method, the Kalman filter, to decode human motor cortical activity. Performance assessment based on standard metrics used for the evaluation of a wide range of pointing devices demonstrated significantly improved cursor control with velocity rather than position decoding.

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pdf preprint pdf from publisher [BibTex]

pdf preprint pdf from publisher [BibTex]


Thumb md learningflow
Learning Optical Flow

Sun, D., Roth, S., Lewis, J., Black, M. J.

In European Conf. on Computer Vision, ECCV, 5304, pages: 83-97, LNCS, (Editors: Forsyth, D. and Torr, P. and Zisserman, A.), Springer-Verlag, October 2008 (inproceedings)

Abstract
Assumptions of brightness constancy and spatial smoothness underlie most optical flow estimation methods. In contrast to standard heuristic formulations, we learn a statistical model of both brightness constancy error and the spatial properties of optical flow using image sequences with associated ground truth flow fields. The result is a complete probabilistic model of optical flow. Specifically, the ground truth enables us to model how the assumption of brightness constancy is violated in naturalistic sequences, resulting in a probabilistic model of "brightness inconstancy". We also generalize previous high-order constancy assumptions, such as gradient constancy, by modeling the constancy of responses to various linear filters in a high-order random field framework. These filters are free variables that can be learned from training data. Additionally we study the spatial structure of the optical flow and how motion boundaries are related to image intensity boundaries. Spatial smoothness is modeled using a Steerable Random Field, where spatial derivatives of the optical flow are steered by the image brightness structure. These models provide a statistical motivation for previous methods and enable the learning of all parameters from training data. All proposed models are quantitatively compared on the Middlebury flow dataset.

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pdf Springerlink version [BibTex]

pdf Springerlink version [BibTex]


Thumb md jnm
A non-parametric Bayesian alternative to spike sorting

Wood, F., Black, M. J.

J. Neuroscience Methods, 173(1):1–12, August 2008 (article)

Abstract
The analysis of extra-cellular neural recordings typically begins with careful spike sorting and all analysis of the data then rests on the correctness of the resulting spike trains. In many situations this is unproblematic as experimental and spike sorting procedures often focus on well isolated units. There is evidence in the literature, however, that errors in spike sorting can occur even with carefully collected and selected data. Additionally, chronically implanted electrodes and arrays with fixed electrodes cannot be easily adjusted to provide well isolated units. In these situations, multiple units may be recorded and the assignment of waveforms to units may be ambiguous. At the same time, analysis of such data may be both scientifically important and clinically relevant. In this paper we address this issue using a novel probabilistic model that accounts for several important sources of uncertainty and error in spike sorting. In lieu of sorting neural data to produce a single best spike train, we estimate a probabilistic model of spike trains given the observed data. We show how such a distribution over spike sortings can support standard neuroscientific questions while providing a representation of uncertainty in the analysis. As a representative illustration of the approach, we analyzed primary motor cortical tuning with respect to hand movement in data recorded with a chronic multi-electrode array in non-human primates.We found that the probabilistic analysis generally agrees with human sorters but suggests the presence of tuned units not detected by humans.

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pdf preprint pdf from publisher PubMed [BibTex]

pdf preprint pdf from publisher PubMed [BibTex]


Thumb md sigalnips
Combined discriminative and generative articulated pose and non-rigid shape estimation

Sigal, L., Balan, A., Black, M. J.

In Advances in Neural Information Processing Systems 20, NIPS-2007, pages: 1337–1344, MIT Press, 2008 (inproceedings)

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pdf [BibTex]

pdf [BibTex]


Thumb md eccv08
The naked truth: Estimating body shape under clothing,

Balan, A., Black, M. J.

In European Conf. on Computer Vision, ECCV, 5304, pages: 15-29, LNCS, (Editors: D. Forsyth and P. Torr and A. Zisserman), Springer-Verlag, Marseilles, France, October 2008 (inproceedings)

Abstract
We propose a method to estimate the detailed 3D shape of a person from images of that person wearing clothing. The approach exploits a model of human body shapes that is learned from a database of over 2000 range scans. We show that the parameters of this shape model can be recovered independently of body pose. We further propose a generalization of the visual hull to account for the fact that observed silhouettes of clothed people do not provide a tight bound on the true 3D shape. With clothed subjects, different poses provide different constraints on the possible underlying 3D body shape. We consequently combine constraints across pose to more accurately estimate 3D body shape in the presence of occluding clothing. Finally we use the recovered 3D shape to estimate the gender of subjects and then employ gender-specific body models to refine our shape estimates. Results on a novel database of thousands of images of clothed and "naked" subjects, as well as sequences from the HumanEva dataset, suggest the method may be accurate enough for biometric shape analysis in video.

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pdf pdf with higher quality images Springerlink version YouTube video on applications data slides [BibTex]

pdf pdf with higher quality images Springerlink version YouTube video on applications data slides [BibTex]


A Predictive Model for Imitation Learning in Partially Observable Environments

Boularias, A.

In ICMLA 2008, pages: 83-90, (Editors: Wani, M. A., X.-W. Chen, D. Casasent, L. A. Kurgan, T. Hu, K. Hafeez), IEEE, Piscataway, NJ, USA, Seventh International Conference on Machine Learning and Applications, December 2008 (inproceedings)

Abstract
Learning by imitation has shown to be a powerful paradigm for automated learning in autonomous robots. This paper presents a general framework of learning by imitation for stochastic and partially observable systems. The model is a Predictive Policy Representation (PPR) whose goal is to represent the teacher‘s policies without any reference to states. The model is fully described in terms of actions and observations only. We show how this model can efficiently learn the personal behavior and preferences of an assistive robot user.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


Two-Channel Control for Scaled Teleoperation

Son, HI. Lee, DY.

In International Conference on Control, Automation and Systems, pages: 1284-1289, IEEE, Piscataway, NJ, USA, International Conference on Control, Automation and Systems (ICCAS), October 2008 (inproceedings)

Abstract
There is a trade-off between stability and performance in haptic control systems. In this paper, a stability and performance analysis is presented for a scaled teleoperation system in an effort to increase the performance of the system while maintaining the stability. The stability is quantitatively defined as a metric using Llewellynpsilas absolute stability criterion. Position tracking and kinesthetic perception are used as the performance indices. The analysis is carried out using various scaling factors and impedances of human and environment. A two-channel position-position (PP) controller and a two-channel force-position (FP) controller are applied for the analysis and simulation.

ei

Web DOI [BibTex]

Web DOI [BibTex]


A Novel Protocol for Accuracy Assessment in Classification of Very High Resolution Multispectral and SAR Images

Bruzzone, L., Persello, C.

In pages: II-265-II-268 , IEEE, Piscataway, NJ, USA, IEEE International Geoscience and Remote Sensing Symposium (IGARSS), July 2008 (inproceedings)

Abstract
This paper presents a novel protocol for the accuracy assessment of thematic maps obtained by the classification of very high resolution images. As the thematic accuracy alone is not sufficient to adequately characterize the geometrical properties of classification maps, we propose a novel protocol that is based on the analysis of two families of indexes: (i) the traditional thematic accuracy indexes, and (ii) a set of geometric indexes that characterize different geometric properties of the objects recognized in the map. These indexes can be used in the training phase of a classifier for identifying the parameters values that optimize classification results on the basis of a multi-objective criterion. Experimental results obtained on Quickbird images show the effectiveness of the proposed protocol in selecting classification maps characterized by better tradeoff between thematic and geometric accuracy with respect to standard accuracy measures.

ei

Web DOI [BibTex]

Web DOI [BibTex]


The genome of the simian and human malaria parasite Plasmodium knowlesi

Pain, A., Böhme, U., Berry, A., Mungall, K., Finn, R., Jackson, A., Mourier, T., Mistry, J., Pasini, E., Aslett, M., Balasubrammaniam, S., Borgwardt, K., Brooks, K., Carret, C., Carver, T., Cherevach, I., Chillingworth, T., Clarke, T., Galinski, M., Hall, N., Harper, D., Harris, D., Hauser, H., Ivens, A., Janssen, C., Keane, T., Larke, N., Lapp, S., Marti, M., Moule, S., Meyer, I., Ormond, D., Peters, N., Sanders, M., Sanders, T., Sergeant, T., Simmonds, M., Smith, F., Squares, R., Thurston, S., Tivey, A., Walker, D., White, B., Zuiderwijk, E., Churcher, C., Quail, M., Cowman, A., Turner, C., Rajandream, M., Kocken, C., Thomas, A., Newbold, C., Barrell, B., Berriman, M.

Nature, 455(7214):799-803, October 2008 (article)

Abstract
Plasmodium knowlesi is an intracellular malaria parasite whose natural vertebrate host is Macaca fascicularis (the 'kra' monkey); however, it is now increasingly recognized as a significant cause of human malaria, particularly in southeast Asia1, 2. Plasmodium knowlesi was the first malaria parasite species in which antigenic variation was demonstrated3, and it has a close phylogenetic relationship to Plasmodium vivax 4, the second most important species of human malaria parasite (reviewed in ref. 4). Despite their relatedness, there are important phenotypic differences between them, such as host blood cell preference, absence of a dormant liver stage or 'hypnozoite' in P. knowlesi, and length of the asexual cycle (reviewed in ref. 4). Here we present an analysis of the P. knowlesi (H strain, Pk1(A+) clone5) nuclear genome sequence. This is the first monkey malaria parasite genome to be described, and it provides an opportunity for comparison with the recently completed P. vivax genome4 and other sequenced Plasmodium genomes6, 7, 8. In contrast to other Plasmodium genomes, putative variant antigen families are dispersed throughout the genome and are associated with intrachromosomal telomere repeats. One of these families, the KIRs9, contains sequences that collectively match over one-half of the host CD99 extracellular domain, which may represent an unusual form of molecular mimicry.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


Adaptation to a sub-optimal desired trajectory

M. Mistry, E.

Advances in Computational Motor Control VII, Symposium at the Society for Neuroscience Meeting, Washington DC, 2008, 2008, clmc (article)

am

PDF [BibTex]

PDF [BibTex]


Human movement generation based on convergent flow fields: A computational model and a behavioral experiment

Hoffmann, H., Schaal, S.

In Advances in Computational Motor Control VII, Symposium at the Society for Neuroscience Meeting, Washington DC, 2008, 2008, clmc (inproceedings)

am

link (url) [BibTex]

link (url) [BibTex]


A Robot System for Biomimetic Navigation: From Snapshots to Metric Embeddings of View Graphs

Franz, MO. Stürzl, W. Reichardt, W. Mallot, HA.

In Robotics and Cognitive Approaches to Spatial Mapping, pages: 297-314, Springer Tracts in Advanced Robotics ; 38, (Editors: Jefferies, M.E. , W.-K. Yeap), Springer, Berlin, Germany, 2008 (inbook)

Abstract
Complex navigation behaviour (way-finding) involves recognizing several places and encoding a spatial relationship between them. Way-finding skills can be classified into a hierarchy according to the complexity of the tasks that can be performed [8]. The most basic form of way-finding is route navigation, followed by topological navigation where several routes are integrated into a graph-like representation. The highest level, survey navigation, is reached when this graph can be embedded into a common reference frame. In this chapter, we present the building blocks for a biomimetic robot navigation system that encompasses all levels of this hierarchy. As a local navigation method, we use scene-based homing. In this scheme, a goal location is characterized either by a panoramic snapshot of the light intensities as seen from the place, or by a record of the distances to the surrounding objects. The goal is found by moving in the direction that minimizes the discrepancy between the recorded intensities or distances and the current sensory input. For learning routes, the robot selects distinct views during exploration that are close enough to be reached by snapshot-based homing. When it encounters already visited places during route learning, it connects the routes and thus forms a topological representation of its environment termed a view graph. The final stage, survey navigation, is achieved by a graph embedding procedure which complements the topologic information of the view graph with odometric position estimates. Calculation of the graph embedding is done with a modified multidimensional scaling algorithm which makes use of distances and angles between nodes.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


Relating the Thermodynamic Arrow of Time to the Causal Arrow

Allahverdyan, A., Janzing, D.

Journal of Statistical Mechanics, 2008(P04001):1-21, April 2008 (article)

Abstract
Consider a Hamiltonian system that consists of a slow subsystem S and a fast subsystem F. The autonomous dynamics of S is driven by an effective Hamiltonian, but its thermodynamics is unexpected. We show that a well-defined thermodynamic arrow of time (second law) emerges for S whenever there is a well-defined causal arrow from S to F and the back-action is negligible. This is because the back-action of F on S is described by a non-globally Hamiltonian Born–Oppenheimer term that violates the Liouville theorem, and makes the second law inapplicable to S. If S and F are mixing, under the causal arrow condition they are described by microcanonical distributions P(S) and P(S|F). Their structure supports a causal inference principle proposed recently in machine learning.

ei

Web DOI [BibTex]

Web DOI [BibTex]


Voluntary Brain Regulation and Communication with ECoG-Signals

Hinterberger, T., Widmann, G., Lal, T., Hill, J., Tangermann, M., Rosenstiel, W., Schölkopf, B., Elger, C., Birbaumer, N.

Epilepsy and Behavior, 13(2):300-306, August 2008 (article)

Abstract
Brain–computer interfaces (BCIs) can be used for communication in writing without muscular activity or for learning to control seizures by voluntary regulation of brain signals such as the electroencephalogram (EEG). Three of five patients with epilepsy were able to spell their names with electrocorticogram (ECoG) signals derived from motor-related areas within only one or two training sessions. Imagery of finger or tongue movements was classified with support-vector classification of autoregressive coefficients derived from the ECoG signals. After training of the classifier, binary classification responses were used to select letters from a computer-generated menu. Offline analysis showed increased theta activity in the unsuccessful patients, whereas the successful patients exhibited dominant sensorimotor rhythms that they could control. The high spatial resolution and increased signal-to-noise ratio in ECoG signals, combined with short training periods, may offer an alternative for communication in complete paralysis, locked-in syndrome, and motor restoration.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


Generalization and Similarity in Exemplar Models of Categorization: Insights from Machine Learning

Jäkel, F., Schölkopf, B., Wichmann, F.

Psychonomic Bulletin and Review, 15(2):256-271, April 2008 (article)

Abstract
Exemplar theories of categorization depend on similarity for explaining subjects’ ability to generalize to new stimuli. A major criticism of exemplar theories concerns their lack of abstraction mechanisms and thus, seemingly, generalization ability. Here, we use insights from machine learning to demonstrate that exemplar models can actually generalize very well. Kernel methods in machine learning are akin to exemplar models and very successful in real-world applications. Their generalization performance depends crucially on the chosen similaritymeasure. While similarity plays an important role in describing generalization behavior it is not the only factor that controls generalization performance. In machine learning, kernel methods are often combined with regularization techniques to ensure good generalization. These same techniques are easily incorporated in exemplar models. We show that the Generalized Context Model (Nosofsky, 1986) and ALCOVE (Kruschke, 1992) are closely related to a statistical model called kernel logistic regression. We argue that generalization is central to the enterprise of understanding categorization behavior and suggest how insights from machine learning can offer some guidance. Keywords: kernel, similarity, regularization, generalization, categorization.

ei

PDF Web DOI [BibTex]


Accurate NMR Structures Through Minimization of an Extended Hybrid Energy

Nilges, M. Bernard, A. Bardiaux, B. Malliavin, T. Habeck, M. Rieping, W.

Structure, 16(9):1305-1312, September 2008 (article)

Abstract
The use of generous distance bounds has been the hallmark of NMR structure determination. However, bounds necessitate the estimation of data quality before the calculation, reduce the information content, introduce human bias, and allow for major errors in the structures. Here, we propose a new rapid structure calculation scheme based on Bayesian analysis. The minimization of an extended energy function, including a new type of distance restraint and a term depending on the data quality, results in an estimation of the data quality in addition to coordinates. This allows for the determination of the optimal weight on the experimental information. The resulting structures are of better quality and closer to the X–ray crystal structure of the same molecule. With the new calculation approach, the analysis of discrepancies from the target distances becomes meaningful. The strategy may be useful in other applications—for example, in homology modeling.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


Reinforcement Learning of Motor Skills with Policy Gradients

Peters, J., Schaal, S.

Neural Networks, 21(4):682-697, May 2008 (article)

ei

PDF Web DOI [BibTex]


ISD: A Software Package for Bayesian NMR Structure Calculation

Rieping, W. Nilges, M. Habeck, M.

Bioinformatics, 24(8):1104-1105, February 2008 (article)

Abstract
SUMMARY: The conventional approach to calculating biomolecular structures from nuclear magnetic resonance (NMR) data is often viewed as subjective due to its dependence on rules of thumb for deriving geometric constraints and suitable values for theory parameters from noisy experimental data. As a result, it can be difficult to judge the precision of an NMR structure in an objective manner. The Inferential Structure Determination (ISD) framework, which has been introduced recently, addresses this problem by using Bayesian inference to derive a probability distribution that represents both the unknown structure and its uncertainty. It also determines additional unknowns, such as theory parameters, that normally need be chosen empirically. Here we give an overview of the ISD software package, which implements this methodology. AVAILABILITY: The program is available at http://www.bioc.cam.ac.uk/isd

ei

Web DOI [BibTex]

Web DOI [BibTex]


Information Consistency of Nonparametric Gaussian Process Methods

Seeger, MW. Kakade, SM. Foster, DP.

IEEE Transactions on Information Theory, 54(5):2376-2382, May 2008 (article)

Abstract
Abstract—Bayesian nonparametric models are widely and successfully used for statistical prediction. While posterior consistency properties are well studied in quite general settings, results have been proved using abstract concepts such as metric entropy, and they come with subtle conditions which are hard to validate and not intuitive when applied to concrete models. Furthermore, convergence rates are difficult to obtain. By focussing on the concept of information consistency for Bayesian Gaussian process (GP)models, consistency results and convergence rates are obtained via a regret bound on cumulative log loss. These results depend strongly on the covariance function of the prior process, thereby giving a novel interpretation to penalization with reproducing kernel Hilbert space norms and to commonly used covariance function classes and their parameters. The proof of the main result employs elementary convexity arguments only. A theorem of Widom is used in order to obtain precise convergence rates for several covariance functions widely used in practice.

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Web DOI [BibTex]

Web DOI [BibTex]