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2015


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Semi-Supervised Interpolation in an Anticausal Learning Scenario

Janzing, D., Schölkopf, B.

Journal of Machine Learning Research, 16, pages: 1923-1948, September 2015 (article)

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link (url) [BibTex]

2015


link (url) [BibTex]


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3D-printed Soft Microrobot for Swimming in Biological Fluids

Qiu, T., Palagi, S., Fischer, P.

In Conf. Proc. IEEE Eng. Med. Biol. Soc., pages: 4922-4925, August 2015 (inproceedings)

Abstract
Microscopic artificial swimmers hold the potential to enable novel non-invasive medical procedures. In order to ease their translation towards real biomedical applications, simpler designs as well as cheaper yet more reliable materials and fabrication processes should be adopted, provided that the functionality of the microrobots can be kept. A simple single-hinge design could already enable microswimming in non-Newtonian fluids, which most bodily fluids are. Here, we address the fabrication of such single-hinge microrobots with a 3D-printed soft material. Firstly, a finite element model is developed to investigate the deformability of the 3D-printed microstructure under typical values of the actuating magnetic fields. Then the microstructures are fabricated by direct 3D-printing of a soft material and their swimming performances are evaluated. The speeds achieved with the 3D-printed microrobots are comparable to those obtained in previous work with complex fabrication procedures, thus showing great promise for 3D-printed microrobots to be operated in biological fluids.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Is Breathing Rate a Confounding Variable in Brain-Computer Interfaces (BCIs) Based on EEG Spectral Power?

Ibarra Chaoul, A., Grosse-Wentrup, M.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 1079-1082, EMBC, August 2015 (conference)

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DOI [BibTex]

DOI [BibTex]


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Testing the role of luminance edges in White’s illusion with contour adaptation

Betz, T., Shapley, R. M., Wichmann, F. A., Maertens, M.

Journal of Vision, 15(11):1-16, August 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Retrospective motion correction of magnitude-input MR images

Loktyushin, A., Schuler, C., Scheffler, K., Schölkopf, B.

First International Workshop on Machine Learning Meets Medical Imaging (MLMMI 2015), held in conjunction with ICML 2015, 9487, pages: 3-12, Lecture Notes in Computer Science, (Editors: K. K. Bhatia and H. Lombaert), Springer, July 2015 (conference)

ei

DOI [BibTex]

DOI [BibTex]


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Kernel methods in medical imaging

Charpiat, G., Hofmann, M., Schölkopf, B.

In Handbook of Biomedical Imaging, pages: 63-81, 4, (Editors: Paragios, N., Duncan, J. and Ayache, N.), Springer, Berlin, Germany, June 2015 (inbook)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Retrospective rigid motion correction of undersampled MRI data

Loktyushin, A., Babayeva, M., Gallichan, D., Krueger, G., Scheffler, K., Kober, T.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Improving Quantitative Susceptibility and R2* Mapping by Applying Retrospective Motion Correction

Feng, X., Loktyushin, A., Deistung, A., Reichenbach, J. R.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]


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Optimal Length of Low Reynolds Number Nanopropellers

Walker (Schamel), D., Kuebler, M., Morozov, K. I., Fischer, P., Leshansky, A. M.

Nano Letters, 15(7):4412-4416, June 2015 (article)

Abstract
Locomotion in fluids at the nanoscale is dominated by viscous drag. One efficient propulsion scheme is to use a weak rotating magnetic field that drives a chiral object. Froth bacterial flagella to artificial drills, the corkscrew is a universally useful chiral shape for propulsion in viscous environments. Externally powered magnetic micro- and nanomotors have been recently developed that allow for precise fuel-free propulsion in complex media. Here, we combine analytical and numerical theory with experiments on nanostructured screw-propellers to show that the optimal length is surprisingly short only about one helical turn, which is shorter than most of the structures in use to date. The results have important implications for the design of artificial actuated nano- and micropropellers and can dramatically reduce fabrication times, while ensuring optimal performance.

pf

DOI [BibTex]

DOI [BibTex]


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Permutohedral Lattice CNNs

Kiefel, M., Jampani, V., Gehler, P. V.

In ICLR Workshop Track, ICLR, May 2015 (inproceedings)

Abstract
This paper presents a convolutional layer that is able to process sparse input features. As an example, for image recognition problems this allows an efficient filtering of signals that do not lie on a dense grid (like pixel position), but of more general features (such as color values). The presented algorithm makes use of the permutohedral lattice data structure. The permutohedral lattice was introduced to efficiently implement a bilateral filter, a commonly used image processing operation. Its use allows for a generalization of the convolution type found in current (spatial) convolutional network architectures.

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pdf link (url) [BibTex]

pdf link (url) [BibTex]


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Blind Retrospective Motion Correction of MR Images

Loktyushin, A.

University of Tübingen, Germany, May 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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A theoretical study of potentially observable chirality-sensitive NMR effects in molecules

Garbacz, P., Cukras, J., Jaszunski, M.

Phys. Chem. Chem. Phys., 17(35):22642-22651, May 2015 (article)

Abstract
Two recently predicted nuclear magnetic resonance effects, the chirality-induced rotating electric polarization and the oscillating magnetization, are examined for several experimentally available chiral molecules. We discuss in detail the requirements for experimental detection of chirality-sensitive NMR effects of the studied molecules. These requirements are related to two parameters: the shielding polarizability and the antisymmetric part of the nuclear magnetic shielding tensor. The dominant second contribution has been computed for small molecules at the coupled cluster and density functional theory levels. It was found that DFT calculations using the KT2 functional and the aug-cc-pCVTZ basis set adequately reproduce the CCSD(T) values obtained with the same basis set. The largest values of parameters, thus most promising from the experimental point of view, were obtained for the fluorine nuclei in 1,3-difluorocyclopropene and 1,3-diphenyl-2-fluoro-3-trifluoromethylcyclopropene.

pf

DOI [BibTex]

DOI [BibTex]


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Dynamic Inclusion Complexes of Metal Nanoparticles Inside Nanocups

Alarcon-Correa, M., Lee, T. C., Fischer, P.

Angew. Chem. Int. Ed., 54(23):6730-6734, May 2015, Featured cover article. (article)

Abstract
Host-guest inclusion complexes are abundant in molecular systems and of fundamental importance in living organisms. Realizing a colloidal analogue of a molecular dynamic inclusion complex is challenging because inorganic nanoparticles (NPs) with a well-defined cavity and portal are difficult to synthesize in high yield and with good structural fidelity. Herein, a generic strategy towards the fabrication of dynamic 1: 1 inclusion complexes of metal nanoparticles inside oxide nanocups with high yield (> 70%) and regiospecificity (> 90%) by means of a reactive double Janus nanoparticle intermediate is reported. Experimental evidence confirms that the inclusion complexes are formed by a kinetically controlled mechanism involving a delicate interplay between bipolar galvanic corrosion and alloying-dealloying oxidation. Release of the NP guest from the nanocups can be efficiently triggered by an external stimulus. Featured cover article.

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DOI [BibTex]

DOI [BibTex]


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Independence of cause and mechanism in brain networks

Besserve, M.

DALI workshop on Networks: Processes and Causality, April 2015 (talk)

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[BibTex]

[BibTex]


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Blind multirigid retrospective motion correction of MR images

Loktyushin, A., Nickisch, H., Pohmann, R., Schölkopf, B.

Magnetic Resonance in Medicine, 73(4):1457-1468, April 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Surface roughness-induced speed increase for active Janus micromotors

Choudhury, U., Soler, L., Gibbs, J. G., Sanchez, S., Fischer, P.

Chem. Comm., 51(41):8660-8663, April 2015 (article)

Abstract
We demonstrate a simple physical fabrication method to control surface roughness of Janus micromotors and fabricate self-propelled active Janus microparticles with rough catalytic platinum surfaces that show a four-fold increase in their propulsion speed compared to conventional Janus particles coated with a smooth Pt layer.

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DOI [BibTex]

DOI [BibTex]


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A quantum advantage for inferring causal structure

Ried, K., Agnew, M., Vermeyden, L., Janzing, D., Spekkens, R. W., Resch, K. J.

Nature Physics, 11(5):414-420, March 2015 (article)

Abstract
The problem of inferring causal relations from observed correlations is relevant to a wide variety of scientific disciplines. Yet given the correlations between just two classical variables, it is impossible to determine whether they arose from a causal influence of one on the other or a common cause influencing both. Only a randomized trial can settle the issue. Here we consider the problem of causal inference for quantum variables. We show that the analogue of a randomized trial, causal tomography, yields a complete solution. We also show that, in contrast to the classical case, one can sometimes infer the causal structure from observations alone. We implement a quantum-optical experiment wherein we control the causal relation between two optical modes, and two measurement schemes—with and without randomization—that extract this relation from the observed correlations. Our results show that entanglement and quantum coherence provide an advantage for causal inference.

ei

DOI [BibTex]

DOI [BibTex]


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Active colloidal microdrills

Gibbs, J. G., Fischer, P.

Chem. Comm., 51(20):4192-4195, Febuary 2015 (article)

Abstract
We demonstrate a chemically driven, autonomous catalytic microdrill. An asymmetric distribution of catalyst causes the helical swimmer to twist while it undergoes directed propulsion. A driving torque and hydrodynamic coupling between translation and rotation at low Reynolds number leads to drill-like swimming behaviour.

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DOI [BibTex]

DOI [BibTex]


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Positive definite matrices and the S-divergence

Sra, S.

Proceedings of the American Mathematical Society, 2015, Published electronically: October 22, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Adaptive information-theoretic bounded rational decision-making with parametric priors

Grau-Moya, J, Braun, DA

pages: 1-4, NIPS Workshop on Bounded Optimality and Rational Metareasoning, December 2015 (conference)

Abstract
Deviations from rational decision-making due to limited computational resources have been studied in the field of bounded rationality, originally proposed by Herbert Simon. There have been a number of different approaches to model bounded rationality ranging from optimality principles to heuristics. Here we take an information-theoretic approach to bounded rationality, where information-processing costs are measured by the relative entropy between a posterior decision strategy and a given fixed prior strategy. In the case of multiple environments, it can be shown that there is an optimal prior rendering the bounded rationality problem equivalent to the rate distortion problem for lossy compression in information theory. Accordingly, the optimal prior and posterior strategies can be computed by the well-known Blahut-Arimoto algorithm which requires the computation of partition sums over all possible outcomes and cannot be applied straightforwardly to continuous problems. Here we derive a sampling-based alternative update rule for the adaptation of prior behaviors of decision-makers and we show convergence to the optimal prior predicted by rate distortion theory. Importantly, the update rule avoids typical infeasible operations such as the computation of partition sums. We show in simulations a proof of concept for discrete action and environment domains. This approach is not only interesting as a generic computational method, but might also provide a more realistic model of human decision-making processes occurring on a fast and a slow time scale.

ei

[BibTex]

[BibTex]


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Structural Intervention Distance (SID) for Evaluating Causal Graphs

Peters, J., Bühlmann, P.

Neural Computation , 27(3):771-799, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Likelihood and Consilience: On Forster’s Counterexamples to the Likelihood Theory of Evidence

Zhang, J., Zhang, K.

Philosophy of Science, Supplementary Volume 2015, 82(5):930-940, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Increasing the sensitivity of Kepler to Earth-like exoplanets

Foreman-Mackey, D., Hogg, D., Schölkopf, B., Wang, D.

Workshop: 225th American Astronomical Society Meeting 2015 , pages: 105.01D, 2015 (poster)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Information-Theoretic Implications of Classical and Quantum Causal Structures

Chaves, R., Majenz, C., Luft, L., Maciel, T., Janzing, D., Schölkopf, B., Gross, D.

18th Conference on Quantum Information Processing (QIP), 2015 (talk)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression

Küffner, R., Zach, N., Norel, R., Hawe, J., Schoenfeld, D., Wang, L., Li, G., Fang, L., Mackey, L., Hardiman, O., Cudkowicz, M., Sherman, A., Ertaylan, G., Grosse-Wentrup, M., Hothorn, T., van Ligtenberg, J., Macke, J., Meyer, T., Schölkopf, B., Tran, L., Vaughan, R., Stolovitzky, G., Leitner, M.

Nature Biotechnology, 33, pages: 51-57, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Inference of Cause and Effect with Unsupervised Inverse Regression

Sgouritsa, E., Janzing, D., Hennig, P., Schölkopf, B.

In Proceedings of the 18th International Conference on Artificial Intelligence and Statistics, 38, pages: 847-855, JMLR Workshop and Conference Proceedings, (Editors: Lebanon, G. and Vishwanathan, S.V.N.), JMLR.org, AISTATS, 2015 (inproceedings)

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Web PDF [BibTex]

Web PDF [BibTex]


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Distinguishing Cause from Effect Based on Exogeneity

Zhang, K., Zhang, J., Schölkopf, B.

In Fifteenth Conference on Theoretical Aspects of Rationality and Knowledge, pages: 261-271, (Editors: Ramanujam, R.), TARK, 2015 (inproceedings)

ei

[BibTex]

[BibTex]


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Probabilistic Interpretation of Linear Solvers

Hennig, P.

SIAM Journal on Optimization, 25(1):234-260, 2015 (article)

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Web PDF link (url) DOI [BibTex]

Web PDF link (url) DOI [BibTex]


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Developing biorobotics for veterinary research into cat movements

Mariti, C., Muscolo, G., Peters, J., Puig, D., Recchiuto, C., Sighieri, C., Solanas, A., von Stryk, O.

Journal of Veterinary Behavior: Clinical Applications and Research, 10(3):248-254, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Identification of Time-Dependent Causal Model: A Gaussian Process Treatment

Huang, B., Zhang, K., Schölkopf, B.

In 24th International Joint Conference on Artificial Intelligence, Machine Learning Track, pages: 3561-3568, (Editors: Yang, Q. and Wooldridge, M.), AAAI Press, Palo Alto, California USA, IJCAI15, 2015 (inproceedings)

ei

link (url) [BibTex]

link (url) [BibTex]


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Spatial statistics and attentional dynamics in scene viewing

Engbert, R., Trukenbrod, H., Barthelmé, S., Wichmann, F.

Journal of Vision, 15(1):1-17, 2015 (article)

ei

Web PDF link (url) DOI [BibTex]

Web PDF link (url) DOI [BibTex]


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The Randomized Causation Coefficient

Lopez-Paz, D., Muandet, K., Recht, B.

Journal of Machine Learning, 16, pages: 2901-2907, 2015 (article)

ei

link (url) [BibTex]

link (url) [BibTex]


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Towards denoising XMCD movies of fast magnetization dynamics using extended Kalman filter

Kopp, M., Harmeling, S., Schütz, G., Schölkopf, B., Fähnle, M.

Ultramicroscopy, 148, pages: 115-122, 2015 (article)

Abstract
The Kalman filter is a well-established approach to get information on the time-dependent state of a system from noisy observations. It was developed in the context of the Apollo project to see the deviation of the true trajectory of a rocket from the desired trajectory. Afterwards it was applied to many different systems with small numbers of components of the respective state vector (typically about 10). In all cases the equation of motion for the state vector was known exactly. The fast dissipative magnetization dynamics is often investigated by x-ray magnetic circular dichroism movies (XMCD movies), which are often very noisy. In this situation the number of components of the state vector is extremely large (about 105), and the equation of motion for the dissipative magnetization dynamics (especially the values of the material parameters of this equation) is not well known. In the present paper it is shown by theoretical considerations that – nevertheless – there is no principle problem for the use of the Kalman filter to denoise XMCD movies of fast dissipative magnetization dynamics.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Multi-Source Domain Adaptation: A Causal View

Zhang, K., Gong, M., Schölkopf, B.

In Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, pages: 3150-3157, AAAI Press, AAAI, 2015 (inproceedings)

ei

Web PDF link (url) [BibTex]

Web PDF link (url) [BibTex]


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Learning of Non-Parametric Control Policies with High-Dimensional State Features

van Hoof, H., Peters, J., Neumann, G.

In Proceedings of the 18th International Conference on Artificial Intelligence and Statistics, 38, pages: 995–1003, (Editors: Lebanon, G. and Vishwanathan, S.V.N. ), JMLR, AISTATS, 2015 (inproceedings)

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link (url) [BibTex]

link (url) [BibTex]


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Artificial intelligence: Learning to see and act

Schölkopf, B.

Nature, News & Views, 518(7540):486-487, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Context affects lightness at the level of surfaces

Maertens, M., Wichmann, F., Shapley, R.

Journal of Vision, 15(1):1-15, 2015 (article)

ei

Web PDF link (url) DOI [BibTex]

Web PDF link (url) DOI [BibTex]


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Towards a Learning Theory of Cause-Effect Inference

Lopez-Paz, D., Muandet, K., Schölkopf, B., Tolstikhin, I.

In Proceedings of the 32nd International Conference on Machine Learning, 37, pages: 1452–1461, JMLR Workshop and Conference Proceedings, (Editors: F. Bach and D. Blei), JMLR, ICML, 2015 (inproceedings)

ei

Web [BibTex]

Web [BibTex]


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Calibrating the pixel-level Kepler imaging data with a causal data-driven model

Wang, D., Foreman-Mackey, D., Hogg, D., Schölkopf, B.

Workshop: 225th American Astronomical Society Meeting 2015 , pages: 258.08, 2015 (poster)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Genome-wide analysis of local chromatin packing in Arabidopsis thaliana

Wang, C., Liu, C., Roqueiro, D., Grimm, D., Schwab, R., Becker, C., Lanz, C., Weigel, D.

Genome Research, 25(2):246-256, 2015 (article)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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BundleMAP: Anatomically Localized Features from dMRI for Detection of Disease

Khatami, M., Schmidt-Wilcke, T., Sundgren, P., Abbasloo, A., Schölkopf, B., Schultz, T.

In 6th International Workshop on Machine Learning in Medical Imaging, 9352, pages: 52-60, Lecture Notes in Computer Science, (Editors: L. Zhou, L. Wang, Q. Wang and Y. Shi), Springer, MLMI, 2015 (inproceedings)

ei

DOI [BibTex]

DOI [BibTex]


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Hierarchical Label Queries with Data-Dependent Partitions

Kpotufe, S., Urner, R., Ben-David, S.

In Proceedings of the 28th Conference on Learning Theory, 40, pages: 1176-1189, (Editors: Grünwald, P. and Hazan, E. and Kale, S. ), JMLR, COLT, 2015 (inproceedings)

ei

link (url) [BibTex]

link (url) [BibTex]


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Semi-Autonomous 3rd-Hand Robot

Lopes, M., Peters, J., Piater, J., Toussaint, M., Baisero, A., Busch, B., Erkent, O., Kroemer, O., Lioutikov, R., Maeda, G., Mollard, Y., Munzer, T., Shukla, D.

In Workshop on Cognitive Robotics in Future Manufacturing Scenarios, European Robotics Forum, 2015 (inproceedings)

am ei

link (url) [BibTex]

link (url) [BibTex]


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A Cognitive Brain-Computer Interface for Patients with Amyotrophic Lateral Sclerosis

Hohmann, M.

Graduate Training Centre of Neuroscience, University of Tübingen, Germany, 2015 (mastersthesis)

ei

[BibTex]

[BibTex]


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Segmentation-based attenuation correction in positron emission tomography/magnetic resonance: erroneous tissue identification and its impact on positron emission tomography interpretation

Brendle, C., Schmidt, H., Oergel, A., Bezrukov, I., Mueller, M., Schraml, C., Pfannenberg, C., la Fougère, C., Nikolaou, K., Schwenzer, N.

Investigative Radiology, 50(5):339-346, 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Neural Adaptive Sequential Monte Carlo

Gu, S., Ghahramani, Z., Turner, R. E.

Advances in Neural Information Processing Systems 28, pages: 2629-2637, (Editors: Corinna Cortes, Neil D. Lawrence, Daniel D. Lee, Masashi Sugiyama, and Roman Garnett), 29th Annual Conference on Neural Information Processing Systems (NIPS), 2015 (conference)

ei

PDF Supplementary [BibTex]

PDF Supplementary [BibTex]


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Discovering Temporal Causal Relations from Subsampled Data

Gong, M., Zhang, K., Schölkopf, B., Tao, D., Geiger, P.

In Proceedings of the 32nd International Conference on Machine Learning, 37, pages: 1898–1906, JMLR Workshop and Conference Proceedings, (Editors: F. Bach and D. Blei), JMLR, ICML, 2015 (inproceedings)

ei

PDF link (url) [BibTex]

PDF link (url) [BibTex]