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2016


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Bootstrat: Population Informed Bootstrapping for Rare Variant Tests

Huang, H., Peloso, G. M., Howrigan, D., Rakitsch, B., Simon-Gabriel, C. J., Goldstein, J. I., Daly, M. J., Borgwardt, K., Neale, B. M.

bioRxiv, 2016, preprint (article)

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link (url) DOI [BibTex]

2016


link (url) DOI [BibTex]


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Probabilistic Movement Models Show that Postural Control Precedes and Predicts Volitional Motor Control

Rueckert, E., Camernik, J., Peters, J., Babic, J.

Nature PG: Scientific Reports, 6(Article number: 28455), 2016 (article)

ei

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Learning Taxonomy Adaptation in Large-scale Classification

Babbar, R., Partalas, I., Gaussier, E., Amini, M., Amblard, C.

Journal of Machine Learning Research, 17(98):1-37, 2016 (article)

ei

link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Hippocampal neural events predict ongoing brain-wide BOLD activity

Besserve, M., Logothetis, N. K.

47th Annual Meeting of the Society for Neuroscience (Neuroscience), 2016 (poster)

ei

[BibTex]

[BibTex]


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BOiS—Berlin Object in Scene Database: Controlled Photographic Images for Visual Search Experiments with Quantified Contextual Priors

Mohr, J., Seyfarth, J., Lueschow, A., Weber, J. E., Wichmann, F. A., Obermayer, K.

Frontiers in Psychology, 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Preface to the ACM TIST Special Issue on Causal Discovery and Inference

Zhang, K., Li, J., Bareinboim, E., Schölkopf, B., Pearl, J.

ACM Transactions on Intelligent Systems and Technologies, 7(2):article no. 17, 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Recurrent Spiking Networks Solve Planning Tasks

Rueckert, E., Kappel, D., Tanneberg, D., Pecevski, D., Peters, J.

Nature PG: Scientific Reports, 6(Article number: 21142), 2016 (article)

ei

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Momentum Control with Hierarchical Inverse Dynamics on a Torque-Controlled Humanoid

Herzog, A., Rotella, N., Mason, S., Grimminger, F., Schaal, S., Righetti, L.

Autonomous Robots, 40(3):473-491, 2016 (article)

Abstract
Hierarchical inverse dynamics based on cascades of quadratic programs have been proposed for the control of legged robots. They have important benefits but to the best of our knowledge have never been implemented on a torque controlled humanoid where model inaccuracies, sensor noise and real-time computation requirements can be problematic. Using a reformulation of existing algorithms, we propose a simplification of the problem that allows to achieve real-time control. Momentum-based control is integrated in the task hierarchy and a LQR design approach is used to compute the desired associated closed-loop behavior and improve performance. Extensive experiments on various balancing and tracking tasks show very robust performance in the face of unknown disturbances, even when the humanoid is standing on one foot. Our results demonstrate that hierarchical inverse dynamics together with momentum control can be efficiently used for feedback control under real robot conditions.

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link (url) DOI [BibTex]


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Inertial Sensor-Based Humanoid Joint State Estimation

Rotella, N., Mason, S., Schaal, S., Righetti, L.

In 2016 IEEE International Conference on Robotics and Automation (ICRA), pages: 1825-1831, IEEE, Stockholm, Sweden, 2016 (inproceedings)

Abstract
This work presents methods for the determination of a humanoid robot's joint velocities and accelerations directly from link-mounted Inertial Measurement Units (IMUs) each containing a three-axis gyroscope and a three-axis accelerometer. No information about the global pose of the floating base or its links is required and precise knowledge of the link IMU poses is not necessary due to presented calibration routines. Additionally, a filter is introduced to fuse gyroscope angular velocities with joint position measurements and compensate the computed joint velocities for time-varying gyroscope biases. The resulting joint velocities are subject to less noise and delay than filtered velocities computed from numerical differentiation of joint potentiometer signals, leading to superior performance in joint feedback control as demonstrated in experiments performed on a SARCOS hydraulic humanoid.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Stepping Stabilization Using a Combination of DCM Tracking and Step Adjustment

Khadiv, M., Kleff, S., Herzog, A., Moosavian, S. A. A., Schaal, S., Righetti, L.

In 2016 4th International Conference on Robotics and Mechatronics (ICROM), pages: 130-135, IEEE, Teheran, Iran, 2016 (inproceedings)

Abstract
In this paper, a method for stabilizing biped robots stepping by a combination of Divergent Component of Motion (DCM) tracking and step adjustment is proposed. In this method, the DCM trajectory is generated, consistent with the predefined footprints. Furthermore, a swing foot trajectory modification strategy is proposed to adapt the landing point, using DCM measurement. In order to apply the generated trajectories to the full robot, a Hierarchical Inverse Dynamics (HID) is employed. The HID enables us to use different combinations of the DCM tracking and step adjustment for stabilizing different biped robots. Simulation experiments on two scenarios for two different simulated robots, one with active ankles and the other with passive ankles, are carried out. Simulation results demonstrate the effectiveness of the proposed method for robots with both active and passive ankles.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Structured contact force optimization for kino-dynamic motion generation

Herzog, A., Schaal, S., Righetti, L.

In 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), pages: 2703-2710, IEEE, Daejeon, South Korea, 2016 (inproceedings)

Abstract
Optimal control approaches in combination with trajectory optimization have recently proven to be a promising control strategy for legged robots. Computationally efficient and robust algorithms were derived using simplified models of the contact interaction between robot and environment such as the linear inverted pendulum model (LIPM). However, as humanoid robots enter more complex environments, less restrictive models become increasingly important. As we leave the regime of linear models, we need to build dedicated solvers that can compute interaction forces together with consistent kinematic plans for the whole-body. In this paper, we address the problem of planning robot motion and interaction forces for legged robots given predefined contact surfaces. The motion generation process is decomposed into two alternating parts computing force and motion plans in coherence. We focus on the properties of the momentum computation leading to sparse optimal control formulations to be exploited by a dedicated solver. In our experiments, we demonstrate that our motion generation algorithm computes consistent contact forces and joint trajectories for our humanoid robot. We also demonstrate the favorable time complexity due to our formulation and composition of the momentum equations.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Balancing and Walking Using Full Dynamics LQR Control With Contact Constraints

Mason, S., Rotella, N., Schaal, S., Righetti, L.

In 2016 IEEE-RAS 16th International Conference on Humanoid Robots (Humanoids), pages: 63-68, IEEE, Cancun, Mexico, 2016 (inproceedings)

Abstract
Torque control algorithms which consider robot dynamics and contact constraints are important for creating dynamic behaviors for humanoids. As computational power increases, algorithms tend to also increase in complexity. However, it is not clear how much complexity is really required to create controllers which exhibit good performance. In this paper, we study the capabilities of a simple approach based on contact consistent LQR controllers designed around key poses to control various tasks on a humanoid robot. We present extensive experimental results on a hydraulic, torque controlled humanoid performing balancing and stepping tasks. This feedback control approach captures the necessary synergies between the DoFs of the robot to guarantee good control performance. We show that for the considered tasks, it is only necessary to re-linearize the dynamics of the robot at different contact configurations and that increasing the number of LQR controllers along desired trajectories does not improve performance. Our result suggest that very simple controllers can yield good performance competitive with current state of the art, but more complex, optimization-based whole-body controllers. A video of the experiments can be found at https://youtu.be/5T08CNKV1hw.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Bio-inspired feedback-circuit implementation of discrete, free energy optimizing, winner-take-all computations

Genewein, T, Braun, DA

Biological Cybernetics, 110(2):135–150, June 2016 (article)

Abstract
Bayesian inference and bounded rational decision-making require the accumulation of evidence or utility, respectively, to transform a prior belief or strategy into a posterior probability distribution over hypotheses or actions. Crucially, this process cannot be simply realized by independent integrators, since the different hypotheses and actions also compete with each other. In continuous time, this competitive integration process can be described by a special case of the replicator equation. Here we investigate simple analog electric circuits that implement the underlying differential equation under the constraint that we only permit a limited set of building blocks that we regard as biologically interpretable, such as capacitors, resistors, voltage-dependent conductances and voltage- or current-controlled current and voltage sources. The appeal of these circuits is that they intrinsically perform normalization without requiring an explicit divisive normalization. However, even in idealized simulations, we find that these circuits are very sensitive to internal noise as they accumulate error over time. We discuss in how far neural circuits could implement these operations that might provide a generic competitive principle underlying both perception and action.

ei

DOI [BibTex]

DOI [BibTex]


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Step Timing Adjustement: a Step toward Generating Robust Gaits

Khadiv, M., Herzog, A., Moosavian, S. A. A., Righetti, L.

In 2016 IEEE-RAS 16th International Conference on Humanoid Robots (Humanoids), pages: 35-42, IEEE, Cancun, Mexico, 2016 (inproceedings)

Abstract
Step adjustment for humanoid robots has been shown to improve robustness in gaits. However, step duration adaptation is often neglected in control strategies. In this paper, we propose an approach that combines both step location and timing adjustment for generating robust gaits. In this approach, step location and step timing are decided, based on feedback from the current state of the robot. The proposed approach is comprised of two stages. In the first stage, the nominal step location and step duration for the next step or a previewed number of steps are specified. In this stage which is done at the start of each step, the main goal is to specify the best step length and step duration for a desired walking speed. The second stage deals with finding the best landing point and landing time of the swing foot at each control cycle. In this stage, stability of the gaits is preserved by specifying a desired offset between the swing foot landing point and the Divergent Component of Motion (DCM) at the end of current step. After specifying the landing point of the swing foot at a desired time, the swing foot trajectory is regenerated at each control cycle to realize desired landing properties. Simulation on different scenarios shows the robustness of the generated gaits from our proposed approach compared to the case where no timing adjustment is employed.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Decision-Making under Ambiguity Is Modulated by Visual Framing, but Not by Motor vs. Non-Motor Context: Experiments and an Information-Theoretic Ambiguity Model

Grau-Moya, J, Ortega, PA, Braun, DA

PLoS ONE, 11(4):1-21, April 2016 (article)

Abstract
A number of recent studies have investigated differences in human choice behavior depending on task framing, especially comparing economic decision-making to choice behavior in equivalent sensorimotor tasks. Here we test whether decision-making under ambiguity exhibits effects of task framing in motor vs. non-motor context. In a first experiment, we designed an experience-based urn task with varying degrees of ambiguity and an equivalent motor task where subjects chose between hitting partially occluded targets. In a second experiment, we controlled for the different stimulus design in the two tasks by introducing an urn task with bar stimuli matching those in the motor task. We found ambiguity attitudes to be mainly influenced by stimulus design. In particular, we found that the same subjects tended to be ambiguity-preferring when choosing between ambiguous bar stimuli, but ambiguity-avoiding when choosing between ambiguous urn sample stimuli. In contrast, subjects’ choice pattern was not affected by changing from a target hitting task to a non-motor context when keeping the stimulus design unchanged. In both tasks subjects’ choice behavior was continuously modulated by the degree of ambiguity. We show that this modulation of behavior can be explained by an information-theoretic model of ambiguity that generalizes Bayes-optimal decision-making by combining Bayesian inference with robust decision-making under model uncertainty. Our results demonstrate the benefits of information-theoretic models of decision-making under varying degrees of ambiguity for a given context, but also demonstrate the sensitivity of ambiguity attitudes across contexts that theoretical models struggle to explain.

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DOI [BibTex]


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On the Effects of Measurement Uncertainty in Optimal Control of Contact Interactions

Ponton, B., Schaal, S., Righetti, L.

In The 12th International Workshop on the Algorithmic Foundations of Robotics WAFR, Berkeley, USA, 2016 (inproceedings)

Abstract
Stochastic Optimal Control (SOC) typically considers noise only in the process model, i.e. unknown disturbances. However, in many robotic applications involving interaction with the environment, such as locomotion and manipulation, uncertainty also comes from lack of precise knowledge of the world, which is not an actual disturbance. We analyze the effects of also considering noise in the measurement model, by devel- oping a SOC algorithm based on risk-sensitive control, that includes the dynamics of an observer in such a way that the control law explicitly de- pends on the current measurement uncertainty. In simulation results on a simple 2D manipulator, we have observed that measurement uncertainty leads to low impedance behaviors, a result in contrast with the effects of process noise that creates stiff behaviors. This suggests that taking into account measurement uncertainty could be a potentially very interesting way to approach problems involving uncertain contact interactions.

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link (url) [BibTex]

link (url) [BibTex]


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A Convex Model of Momentum Dynamics for Multi-Contact Motion Generation

Ponton, B., Herzog, A., Schaal, S., Righetti, L.

In 2016 IEEE-RAS 16th International Conference on Humanoid Robots Humanoids, pages: 842-849, IEEE, Cancun, Mexico, 2016 (inproceedings)

Abstract
Linear models for control and motion generation of humanoid robots have received significant attention in the past years, not only due to their well known theoretical guarantees, but also because of practical computational advantages. However, to tackle more challenging tasks and scenarios such as locomotion on uneven terrain, a more expressive model is required. In this paper, we are interested in contact interaction-centered motion optimization based on the momentum dynamics model. This model is non-linear and non-convex; however, we find a relaxation of the problem that allows us to formulate it as a single convex quadratically-constrained quadratic program (QCQP) that can be very efficiently optimized and is useful for multi-contact planning. This convex model is then coupled to the optimization of end-effector contact locations using a mixed integer program, which can also be efficiently solved. This becomes relevant e.g. to recover from external pushes, where a predefined stepping plan is likely to fail and an online adaptation of the contact location is needed. The performance of our algorithm is demonstrated in several multi-contact scenarios for a humanoid robot.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]

2015


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Learning Torque Control in Presence of Contacts using Tactile Sensing from Robot Skin

Calandra, R., Ivaldi, S., Deisenroth, M., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 690-695, Humanoids, November 2015 (inproceedings)

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link (url) DOI [BibTex]

2015


link (url) DOI [BibTex]


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Evaluation of Interactive Object Recognition with Tactile Sensing

Hoelscher, J., Peters, J., Hermans, T.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 310-317, Humanoids, November 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Optimizing Robot Striking Movement Primitives with Iterative Learning Control

Koc, O., Maeda, G., Neumann, G., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 80-87, Humanoids, November 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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easyGWAS: An Integrated Computational Framework for Advanced Genome-Wide Association Studies

Grimm, Dominik

Eberhard Karls Universität Tübingen, November 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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A Comparison of Contact Distribution Representations for Learning to Predict Object Interactions

Leischnig, S., Luettgen, S., Kroemer, O., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 616-622, Humanoids, November 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Quantifying changes in climate variability and extremes: Pitfalls and their overcoming

Sippel, S., Zscheischler, J., Heimann, M., Otto, F. E. L., Peters, J., Mahecha, M. D.

Geophysical Research Letters, 42(22):9990-9998, November 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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First-Person Tele-Operation of a Humanoid Robot

Fritsche, L., Unverzagt, F., Peters, J., Calandra, R.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 997-1002, Humanoids, November 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Segmentation Applied to an Assembly Task

Lioutikov, R., Neumann, G., Maeda, G., Peters, J.

In 15th IEEE-RAS International Conference on Humanoid Robots, pages: 533-540, Humanoids, November 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Diversity of sharp wave-ripple LFP signatures reveals differentiated brain-wide dynamical events

Ramirez-Villegas, J. F., Logothetis, N. K., Besserve, M.

Proceedings of the National Academy of Sciences U.S.A, 112(46):E6379-E6387, November 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Causal Discovery Beyond Conditional Independences

Sgouritsa, E.

Eberhard Karls Universität Tübingen, Germany, October 2015 (phdthesis)

ei

link (url) [BibTex]

link (url) [BibTex]


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Automatic LQR Tuning Based on Gaussian Process Optimization: Early Experimental Results

Marco, A., Hennig, P., Bohg, J., Schaal, S., Trimpe, S.

Machine Learning in Planning and Control of Robot Motion Workshop at the IEEE/RSJ International Conference on Intelligent Robots and Systems (iROS), pages: , , Machine Learning in Planning and Control of Robot Motion Workshop, October 2015 (conference)

Abstract
This paper proposes an automatic controller tuning framework based on linear optimal control combined with Bayesian optimization. With this framework, an initial set of controller gains is automatically improved according to a pre-defined performance objective evaluated from experimental data. The underlying Bayesian optimization algorithm is Entropy Search, which represents the latent objective as a Gaussian process and constructs an explicit belief over the location of the objective minimum. This is used to maximize the information gain from each experimental evaluation. Thus, this framework shall yield improved controllers with fewer evaluations compared to alternative approaches. A seven-degree-of-freedom robot arm balancing an inverted pole is used as the experimental demonstrator. Preliminary results of a low-dimensional tuning problem highlight the method’s potential for automatic controller tuning on robotic platforms.

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PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Diversity of sharp wave-ripples in the CA1 of the macaque hippocampus and their brain wide signatures

Ramirez-Villegas, J. F., Logothetis, N. K., Besserve, M.

45th Annual Meeting of the Society for Neuroscience (Neuroscience 2015), October 2015 (poster)

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link (url) [BibTex]

link (url) [BibTex]


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Noise masking of White’s illusion exposes the weakness of current spatial filtering models of lightness perception

Betz, T., Shapley, R. M., Wichmann, F. A., Maertens, M.

Journal of Vision, 15(14):1-17, October 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Permutational Rademacher Complexity: a New Complexity Measure for Transductive Learning

Tolstikhin, I., Zhivotovskiy, N., Blanchard, G.

In Proceedings of the 26th International Conference on Algorithmic Learning Theory, 9355, pages: 209-223, Lecture Notes in Computer Science, (Editors: K. Chaudhuri, C. Gentile and S. Zilles), Springer, ALT, October 2015 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Causal Inference for Empirical Time Series Based on the Postulate of Independence of Cause and Mechanism

Besserve, M.

53rd Annual Allerton Conference on Communication, Control, and Computing, September 2015 (talk)

ei

[BibTex]

[BibTex]


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From Points to Probability Measures: A Statistical Learning on Distributions with Kernel Mean Embedding

Muandet, K.

University of Tübingen, Germany, University of Tübingen, Germany, September 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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Machine Learning Approaches to Image Deconvolution

Schuler, C.

University of Tübingen, Germany, University of Tübingen, Germany, September 2015 (phdthesis)

ei

[BibTex]

[BibTex]


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Stabilizing Novel Objects by Learning to Predict Tactile Slip

Veiga, F., van Hoof, H., Peters, J., Hermans, T.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 5065-5072, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer

Besserve, M., Lowe, S. C., Logothetis, N. K., Schölkopf, B., Panzeri, S.

PLOS Biology, 13(9):e1002257, September 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Model-Free Probabilistic Movement Primitives for Physical Interaction

Paraschos, A., Rueckert, E., Peters, J., Neumann, G.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 2860-2866, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Combined Pose-Wrench and State Machine Representation for Modeling Robotic Assembly Skills

Wahrburg, A., Zeiss, S., Matthias, B., Peters, J., Ding, H.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 852-857, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Progress Prediction and Sequencing of Concurrent Movement Primitives

Manschitz, S., Kober, J., Gienger, M., Peters, J.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 449-455, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Reinforcement Learning vs Human Programming in Tetherball Robot Games

Parisi, S., Abdulsamad, H., Paraschos, A., Daniel, C., Peters, J.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 6428-6434, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Learning Motor Skills from Partially Observed Movements Executed at Different Speeds

Ewerton, M., Maeda, G., Peters, J., Neumann, G.

In Proceedings of the IEEE/RSJ Conference on Intelligent Robots and Systems, pages: 456-463, IROS, September 2015 (inproceedings)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Semi-Supervised Interpolation in an Anticausal Learning Scenario

Janzing, D., Schölkopf, B.

Journal of Machine Learning Research, 16, pages: 1923-1948, September 2015 (article)

ei

link (url) [BibTex]

link (url) [BibTex]


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Is Breathing Rate a Confounding Variable in Brain-Computer Interfaces (BCIs) Based on EEG Spectral Power?

Ibarra Chaoul, A., Grosse-Wentrup, M.

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 1079-1082, EMBC, August 2015 (conference)

ei

DOI [BibTex]

DOI [BibTex]


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Testing the role of luminance edges in White’s illusion with contour adaptation

Betz, T., Shapley, R. M., Wichmann, F. A., Maertens, M.

Journal of Vision, 15(11):1-16, August 2015 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Retrospective motion correction of magnitude-input MR images

Loktyushin, A., Schuler, C., Scheffler, K., Schölkopf, B.

First International Workshop on Machine Learning Meets Medical Imaging (MLMMI 2015), held in conjunction with ICML 2015, 9487, pages: 3-12, Lecture Notes in Computer Science, (Editors: K. K. Bhatia and H. Lombaert), Springer, July 2015 (conference)

ei

DOI [BibTex]

DOI [BibTex]


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Kernel methods in medical imaging

Charpiat, G., Hofmann, M., Schölkopf, B.

In Handbook of Biomedical Imaging, pages: 63-81, 4, (Editors: Paragios, N., Duncan, J. and Ayache, N.), Springer, Berlin, Germany, June 2015 (inbook)

ei

Web link (url) [BibTex]

Web link (url) [BibTex]


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Retrospective rigid motion correction of undersampled MRI data

Loktyushin, A., Babayeva, M., Gallichan, D., Krueger, G., Scheffler, K., Kober, T.

23rd Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM, June 2015 (poster)

ei

[BibTex]

[BibTex]