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2011


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Kernel Methods in Bioinformatics

Borgwardt, KM.

In Handbook of Statistical Bioinformatics, pages: 317-334, Springer Handbooks of Computational Statistics ; 3, (Editors: Lu, H.H.-S., Schölkopf, B. and Zhao, H.), Springer, Berlin, Germany, 2011 (inbook)

Abstract
Kernel methods have now witnessed more than a decade of increasing popularity in the bioinformatics community. In this article, we will compactly review this development, examining the areas in which kernel methods have contributed to computational biology and describing the reasons for their success.

ei

PDF DOI [BibTex]

2011


PDF DOI [BibTex]


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Cue Combination: Beyond Optimality

Rosas, P., Wichmann, F.

In Sensory Cue Integration, pages: 144-152, (Editors: Trommershäuser, J., Körding, K. and Landy, M. S.), Oxford University Press, 2011 (inbook)

ei

[BibTex]

[BibTex]


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Model Learning in Robot Control

Nguyen-Tuong, D.

Albert-Ludwigs-Universität Freiburg, Germany, 2011 (phdthesis)

ei

[BibTex]

[BibTex]


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Iterative path integral stochastic optimal control: Theory and applications to motor control

Theodorou, E. A.

University of Southern California, University of Southern California, Los Angeles, CA, 2011 (phdthesis)

am

PDF [BibTex]

PDF [BibTex]


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Learning of grasp selection based on shape-templates

Herzog, A.

Karlsruhe Institute of Technology, 2011 (mastersthesis)

am

[BibTex]

[BibTex]


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Automated Control of AFM Based Nanomanipulation

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 237-311, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Ferromagnetism of ZnO influenced by physical and chemical treatment

Chen, Y.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]


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Herstellung und Charakterisierung von ultradünnen, funktionellen CoFeB Filmen

Streckenbach, F.

Hochschule Esslingen / Hochschule Aalen, Esslingen / Aalen, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]


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Hydrogen adsorption on metal-organic frameworks

Streppel, B.

Universität Stuttgart, Stuttgart, 2011 (phdthesis)

mms

link (url) [BibTex]

link (url) [BibTex]


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Teleoperation Based AFM Manipulation Control

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 145-235, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Descriptions and challenges of AFM based nanorobotic systems

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 13-29, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Tipping the Scales: Guidance and Intrinsically Motivated Behavior

Martius, G., Herrmann, J. M.

In Advances in Artificial Life, ECAL 2011, pages: 506-513, (Editors: Tom Lenaerts and Mario Giacobini and Hugues Bersini and Paul Bourgine and Marco Dorigo and René Doursat), MIT Press, 2011 (incollection)

al

[BibTex]

[BibTex]


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Benchmark datasets for pose estimation and tracking

Andriluka, M., Sigal, L., Black, M. J.

In Visual Analysis of Humans: Looking at People, pages: 253-274, (Editors: Moesland and Hilton and Kr"uger and Sigal), Springer-Verlag, London, 2011 (incollection)

ps

publisher's site Project Page [BibTex]

publisher's site Project Page [BibTex]


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Piezo driven strain effects on magneto-crystalline anisotropy

Badr, E.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]


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Magnetooptische Untersuchungen an granularen und beschichteten MgB2 Filmen

Stahl, C.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]


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Mikromagnetismus der Wechselwirkung von Spinwellen mit Domänenwänden in Ferromagneten

Macke, S.

Universität Stuttgart, Stuttgart, 2011 (phdthesis)

mms

[BibTex]

[BibTex]


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Applications of AFM Based Nanorobotic Systems

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 313-342, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Steerable random fields for image restoration and inpainting

Roth, S., Black, M. J.

In Markov Random Fields for Vision and Image Processing, pages: 377-387, (Editors: Blake, A. and Kohli, P. and Rother, C.), MIT Press, 2011 (incollection)

Abstract
This chapter introduces the concept of a Steerable Random Field (SRF). In contrast to traditional Markov random field (MRF) models in low-level vision, the random field potentials of a SRF are defined in terms of filter responses that are steered to the local image structure. This steering uses the structure tensor to obtain derivative responses that are either aligned with, or orthogonal to, the predominant local image structure. Analysis of the statistics of these steered filter responses in natural images leads to the model proposed here. Clique potentials are defined over steered filter responses using a Gaussian scale mixture model and are learned from training data. The SRF model connects random fields with anisotropic regularization and provides a statistical motivation for the latter. Steering the random field to the local image structure improves image denoising and inpainting performance compared with traditional pairwise MRFs.

ps

publisher site [BibTex]

publisher site [BibTex]


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Herstellung und Qualifizierung gesputterter Magnesiumdiboridschichten

Breyer, F.

Hochschule Aalen, Aalen, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]


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Nanomechanics of AFM based nanomanipulation

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 87-143, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Instrumentation Issues of an AFM Based Nanorobotic System

Xie, H., Onal, C., Régnier, S., Sitti, M.

In Atomic Force Microscopy Based Nanorobotics, pages: 31-86, Springer Berlin Heidelberg, 2011 (incollection)

pi

[BibTex]

[BibTex]


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Projected Newton-type methods in machine learning

Schmidt, M., Kim, D., Sra, S.

In Optimization for Machine Learning, pages: 305-330, MIT Press, Cambridge, MA, USA, 2011 (incollection)

Abstract
{We consider projected Newton-type methods for solving large-scale optimization problems arising in machine learning and related fields. We first introduce an algorithmic framework for projected Newton-type methods by reviewing a canonical projected (quasi-)Newton method. This method, while conceptually pleasing, has a high computation cost per iteration. Thus, we discuss two variants that are more scalable, namely, two-metric projection and inexact projection methods. Finally, we show how to apply the Newton-type framework to handle non-smooth objectives. Examples are provided throughout the chapter to illustrate machine learning applications of our framework.}

mms

link (url) [BibTex]

link (url) [BibTex]


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Study of krypton/xenon storage and separation in microporous frameworks

Soleimani Dorcheh, A.

Universität Darmstadt, Darmstadt, 2011 (mastersthesis)

mms

[BibTex]

[BibTex]

2010


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Markerless tracking of Dynamic 3D Scans of Faces

Walder, C., Breidt, M., Bülthoff, H., Schölkopf, B., Curio, C.

In Dynamic Faces: Insights from Experiments and Computation, pages: 255-276, (Editors: Curio, C., Bülthoff, H. H. and Giese, M. A.), MIT Press, Cambridge, MA, USA, December 2010 (inbook)

ei

Web [BibTex]

2010


Web [BibTex]


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Policy Gradient Methods

Peters, J., Bagnell, J.

In Encyclopedia of Machine Learning, pages: 774-776, (Editors: Sammut, C. and Webb, G. I.), Springer, Berlin, Germany, December 2010 (inbook)

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Bayesian Inference and Experimental Design for Large Generalised Linear Models

Nickisch, H.

Biologische Kybernetik, Technische Universität Berlin, Berlin, Germany, September 2010 (phdthesis)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Inferring High-Dimensional Causal Relations using Free Probability Theory

Zscheischler, J.

Humboldt Universität Berlin, Germany, August 2010 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


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Semi-supervised Subspace Learning and Application to Human Functional Magnetic Brain Resonance Imaging Data

Shelton, J.

Biologische Kybernetik, Eberhard Karls Universität, Tübingen, Germany, July 2010 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


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Quantitative Evaluation of MR-based Attenuation Correction for Positron Emission Tomography (PET)

Mantlik, F.

Biologische Kybernetik, Universität Mannheim, Germany, March 2010 (diplomathesis)

ei

[BibTex]

[BibTex]


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Learning Continuous Grasp Affordances by Sensorimotor Exploration

Detry, R., Baseski, E., Popovic, M., Touati, Y., Krüger, N., Kroemer, O., Peters, J., Piater, J.

In From Motor Learning to Interaction Learning in Robots, pages: 451-465, Studies in Computational Intelligence ; 264, (Editors: Sigaud, O. and Peters, J.), Springer, Berlin, Germany, January 2010 (inbook)

Abstract
We develop means of learning and representing object grasp affordances probabilistically. By grasp affordance, we refer to an entity that is able to assess whether a given relative object-gripper configuration will yield a stable grasp. These affordances are represented with grasp densities, continuous probability density functions defined on the space of 3D positions and orientations. Grasp densities are registered with a visual model of the object they characterize. They are exploited by aligning them to a target object using visual pose estimation. Grasp densities are refined through experience: A robot “plays” with an object by executing grasps drawn randomly for the object’s grasp density. The robot then uses the outcomes of these grasps to build a richer density through an importance sampling mechanism. Initial grasp densities, called hypothesis densities, are bootstrapped from grasps collected using a motion capture system, or from grasps generated from the visual model of the object. Refined densities, called empirical densities, represent affordances that have been confirmed through physical experience. The applicability of our method is demonstrated by producing empirical densities for two object with a real robot and its 3-finger hand. Hypothesis densities are created from visual cues and human demonstration.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Imitation and Reinforcement Learning for Motor Primitives with Perceptual Coupling

Kober, J., Mohler, B., Peters, J.

In From Motor Learning to Interaction Learning in Robots, pages: 209-225, Studies in Computational Intelligence ; 264, (Editors: Sigaud, O. and Peters, J.), Springer, Berlin, Germany, January 2010 (inbook)

Abstract
Traditional motor primitive approaches deal largely with open-loop policies which can only deal with small perturbations. In this paper, we present a new type of motor primitive policies which serve as closed-loop policies together with an appropriate learning algorithm. Our new motor primitives are an augmented version version of the dynamical system-based motor primitives [Ijspeert et al(2002)Ijspeert, Nakanishi, and Schaal] that incorporates perceptual coupling to external variables. We show that these motor primitives can perform complex tasks such as Ball-in-a-Cup or Kendama task even with large variances in the initial conditions where a skilled human player would be challenged. We initialize the open-loop policies by imitation learning and the perceptual coupling with a handcrafted solution. We first improve the open-loop policies and subsequently the perceptual coupling using a novel reinforcement learning method which is particularly well-suited for dynamical system-based motor primitives.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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From Motor Learning to Interaction Learning in Robots

Sigaud, O., Peters, J.

In From Motor Learning to Interaction Learning in Robots, pages: 1-12, Studies in Computational Intelligence ; 264, (Editors: Sigaud, O. and Peters, J.), Springer, Berlin, Germany, January 2010 (inbook)

Abstract
The number of advanced robot systems has been increasing in recent years yielding a large variety of versatile designs with many degrees of freedom. These robots have the potential of being applicable in uncertain tasks outside wellstructured industrial settings. However, the complexity of both systems and tasks is often beyond the reach of classical robot programming methods. As a result, a more autonomous solution for robot task acquisition is needed where robots adaptively adjust their behaviour to the encountered situations and required tasks. Learning approaches pose one of the most appealing ways to achieve this goal. However, while learning approaches are of high importance for robotics, we cannot simply use off-the-shelf methods from the machine learning community as these usually do not scale into the domains of robotics due to excessive computational cost as well as a lack of scalability. Instead, domain appropriate approaches are needed. In this book, we focus on several core domains of robot learning. For accurate task execution, we need motor learning capabilities. For fast learning of the motor tasks, imitation learning offers the most promising approach. Self improvement requires reinforcement learning approaches that scale into the domain of complex robots. Finally, for efficient interaction of humans with robot systems, we will need a form of interaction learning. This chapter provides a general introduction to these issues and briefly presents the contributions of the subsequent chapters to the corresponding research topics.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Real-Time Local GP Model Learning

Nguyen-Tuong, D., Seeger, M., Peters, J.

In From Motor Learning to Interaction Learning in Robots, 264, pages: 193-207, Studies in Computational Intelligence, (Editors: Sigaud, O. and Peters, J.), Springer, Berlin, Germany, January 2010 (inbook)

Abstract
For many applications in robotics, accurate dynamics models are essential. However, in some applications, e.g., in model-based tracking control, precise dynamics models cannot be obtained analytically for sufficiently complex robot systems. In such cases, machine learning offers a promising alternative for approximating the robot dynamics using measured data. However, standard regression methods such as Gaussian process regression (GPR) suffer from high computational complexity which prevents their usage for large numbers of samples or online learning to date. In this paper, we propose an approximation to the standard GPR using local Gaussian processes models inspired by [Vijayakumar et al(2005)Vijayakumar, D’Souza, and Schaal, Snelson and Ghahramani(2007)]. Due to reduced computational cost, local Gaussian processes (LGP) can be applied for larger sample-sizes and online learning. Comparisons with other nonparametric regressions, e.g., standard GPR, support vector regression (SVR) and locally weighted proje ction regression (LWPR), show that LGP has high approximation accuracy while being sufficiently fast for real-time online learning.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Finding Gene-Gene Interactions using Support Vector Machines

Rakitsch, B.

Eberhard Karls Universität Tübingen, Germany, 2010 (diplomathesis)

ei

[BibTex]

[BibTex]


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Accurate Prediction of Protein-Coding Genes with Discriminative Learning Techniques

Schweikert, G.

Technische Universität Berlin, Germany, 2010 (phdthesis)

ei

[BibTex]


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Machine Learning Methods for Automatic Image Colorization

Charpiat, G., Bezrukov, I., Hofmann, M., Altun, Y., Schölkopf, B.

In Computational Photography: Methods and Applications, pages: 395-418, Digital Imaging and Computer Vision, (Editors: Lukac, R.), CRC Press, Boca Raton, FL, USA, 2010 (inbook)

Abstract
We aim to color greyscale images automatically, without any manual intervention. The color proposition could then be interactively corrected by user-provided color landmarks if necessary. Automatic colorization is nontrivial since there is usually no one-to-one correspondence between color and local texture. The contribution of our framework is that we deal directly with multimodality and estimate, for each pixel of the image to be colored, the probability distribution of all possible colors, instead of choosing the most probable color at the local level. We also predict the expected variation of color at each pixel, thus defining a non-uniform spatial coherency criterion. We then use graph cuts to maximize the probability of the whole colored image at the global level. We work in the L-a-b color space in order to approximate the human perception of distances between colors, and we use machine learning tools to extract as much information as possible from a dataset of colored examples. The resulting algorithm is fast, designed to be more robust to texture noise, and is above all able to deal with ambiguity, in contrary to previous approaches.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Structural and Relational Data Mining for Systems Biology Applications

Georgii, E.

Eberhard Karls Universität Tübingen, Germany , 2010 (phdthesis)

ei

Web [BibTex]

Web [BibTex]


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Population Coding in the Visual System: Statistical Methods and Theory

Macke, J.

Eberhard Karls Universität Tübingen, Germany, 2010 (phdthesis)

ei

[BibTex]

[BibTex]


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Bayesian Methods for Neural Data Analysis

Gerwinn, S.

Eberhard Karls Universität Tübingen, Germany, 2010 (phdthesis)

ei

Web [BibTex]

Web [BibTex]


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Approaches Based on Support Vector Machine to Classification of Remote Sensing Data

Bruzzone, L., Persello, C.

In Handbook of Pattern Recognition and Computer Vision, pages: 329-352, (Editors: Chen, C.H.), ICP, London, UK, 2010 (inbook)

Abstract
This chapter presents an extensive and critical review on the use of kernel methods and in particular of support vector machines (SVMs) in the classification of remote-sensing (RS) data. The chapter recalls the mathematical formulation and the main theoretical concepts related to SVMs, and discusses the motivations at the basis of the use of SVMs in remote sensing. A review on the main applications of SVMs in classification of remote sensing is given, presenting a literature survey on the use of SVMs for the analysis of different kinds of RS images. In addition, the most recent methodological developments related to SVM-based classification techniques in RS are illustrated by focusing on semisupervised, domain adaptation, and context sensitive approaches. Finally, the most promising research directions on SVM in RS are identified and discussed.

ei

Web [BibTex]

Web [BibTex]


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Clustering with Neighborhood Graphs

Maier, M.

Universität des Saarlandes, Saarbrücken, Germany, 2010 (phdthesis)

ei

Web [BibTex]

Web [BibTex]


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Detecting the mincut in sparse random graphs

Köhler, R.

Eberhard Karls Universität Tübingen, Germany, 2010 (diplomathesis)

ei

[BibTex]

[BibTex]


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A wider view on encoding and decoding in the visual brain-computer interface speller system

Martens, S.

Eberhard Karls Universität Tübingen, Germany, 2010 (phdthesis)

ei

[BibTex]


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Nanohandling robot cells

Fatikow, Sergej, Wich, Thomas, Dahmen, Christian, Jasper, Daniel, Stolle, Christian, Eichhorn, Volkmar, Hagemann, Saskia, Weigel-Jech, Michael

In Handbook of Nanophysics: Nanomedicine and Nanorobotics, pages: 1-31, CRC Press, 2010 (incollection)

pi

[BibTex]

[BibTex]