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2000


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Knowledge Discovery in Databases: An Information Retrieval Perspective

Ong, CS.

Malaysian Journal of Computer Science, 13(2):54-63, December 2000 (article)

Abstract
The current trend of increasing capabilities in data generation and collection has resulted in an urgent need for data mining applications, also called knowledge discovery in databases. This paper identifies and examines the issues involved in extracting useful grains of knowledge from large amounts of data. It describes a framework to categorise data mining systems. The author also gives an overview of the issues pertaining to data pre processing, as well as various information gathering methodologies and techniques. The paper covers some popular tools such as classification, clustering, and generalisation. A summary of statistical and machine learning techniques used currently is also provided.

ei

PDF [BibTex]

2000


PDF [BibTex]


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A Simple Iterative Approach to Parameter Optimization

Zien, A., Zimmer, R., Lengauer, T.

Journal of Computational Biology, 7(3,4):483-501, November 2000 (article)

Abstract
Various bioinformatics problems require optimizing several different properties simultaneously. For example, in the protein threading problem, a scoring function combines the values for different parameters of possible sequence-to-structure alignments into a single score to allow for unambiguous optimization. In this context, an essential question is how each property should be weighted. As the native structures are known for some sequences, a partial ordering on optimal alignments to other structures, e.g., derived from structural comparisons, may be used to adjust the weights. To resolve the arising interdependence of weights and computed solutions, we propose a heuristic approach: iterating the computation of solutions (here, threading alignments) given the weights and the estimation of optimal weights of the scoring function given these solutions via systematic calibration methods. For our application (i.e., threading), this iterative approach results in structurally meaningful weights that significantly improve performance on both the training and the test data sets. In addition, the optimized parameters show significant improvements on the recognition rate for a grossly enlarged comprehensive benchmark, a modified recognition protocol as well as modified alignment types (local instead of global and profiles instead of single sequences). These results show the general validity of the optimized weights for the given threading program and the associated scoring contributions.

ei

Web [BibTex]

Web [BibTex]


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Identification of Drug Target Proteins

Zien, A., Küffner, R., Mevissen, T., Zimmer, R., Lengauer, T.

ERCIM News, 43, pages: 16-17, October 2000 (article)

ei

Web [BibTex]

Web [BibTex]


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Engineering Support Vector Machine Kernels That Recognize Translation Initiation Sites

Zien, A., Rätsch, G., Mika, S., Schölkopf, B., Lengauer, T., Müller, K.

Bioinformatics, 16(9):799-807, September 2000 (article)

Abstract
Motivation: In order to extract protein sequences from nucleotide sequences, it is an important step to recognize points at which regions start that code for proteins. These points are called translation initiation sites (TIS). Results: The task of finding TIS can be modeled as a classification problem. We demonstrate the applicability of support vector machines for this task, and show how to incorporate prior biological knowledge by engineering an appropriate kernel function. With the described techniques the recognition performance can be improved by 26% over leading existing approaches. We provide evidence that existing related methods (e.g. ESTScan) could profit from advanced TIS recognition.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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A Meanfield Approach to the Thermodynamics of a Protein-Solvent System with Application to the Oligomerization of the Tumour Suppressor p53.

Noolandi, J., Davison, TS., Vokel, A., Nie, F., Kay, C., Arrowsmith, C.

Proceedings of the National Academy of Sciences of the United States of America, 97(18):9955-9960, August 2000 (article)

ei

Web [BibTex]

Web [BibTex]


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New Support Vector Algorithms

Schölkopf, B., Smola, A., Williamson, R., Bartlett, P.

Neural Computation, 12(5):1207-1245, May 2000 (article)

Abstract
We propose a new class of support vector algorithms for regression and classification. In these algorithms, a parameter {nu} lets one effectively control the number of support vectors. While this can be useful in its own right, the parameterization has the additional benefit of enabling us to eliminate one of the other free parameters of the algorithm: the accuracy parameter {epsilon} in the regression case, and the regularization constant C in the classification case. We describe the algorithms, give some theoretical results concerning the meaning and the choice of {nu}, and report experimental results.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Bounds on Error Expectation for Support Vector Machines

Vapnik, V., Chapelle, O.

Neural Computation, 12(9):2013-2036, 2000 (article)

Abstract
We introduce the concept of span of support vectors (SV) and show that the generalization ability of support vector machines (SVM) depends on this new geometrical concept. We prove that the value of the span is always smaller (and can be much smaller) than the diameter of the smallest sphere containing th e support vectors, used in previous bounds. We also demonstate experimentally that the prediction of the test error given by the span is very accurate and has direct application in model selection (choice of the optimal parameters of the SVM)

ei

GZIP [BibTex]

GZIP [BibTex]


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Anisotropic flux pinning in thin YBCO-films by substrate modifications

Leonhardt, S., Warthmann, R., Albrecht, J., Jooss, C., Kronmüller, H., Haage, T., Zegenhagen, J., Habermeier, H.-U.

{Physica C}, 332, pages: 214-218, 2000 (article)

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[BibTex]

[BibTex]


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A review of the magnetic relaxation and its application to the study of atomic defects in α-iron and its diuluted alloys

Blythe, H. J., Kronmüller, H., Seeger, A., Walz, F.

{Physica Status Solidi (A)}, 181, pages: 233-345, 2000 (article)

mms

[BibTex]

[BibTex]


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Magnetic properties of Sm2Co17-xGax (x \textequals 0-7) compounds

Liang, B., Kleinschroth, I., Shen, B. G., Kronmüller, H.

{Journal of Applied Physics}, 87, pages: 5314-5316, 2000 (article)

mms

[BibTex]

[BibTex]


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Computational micromagnetism of magnetic structures and magnetization processes in small particles

Kronmüller, H., Hertel, R.

{Journal of Magnetism and Magnetic Materials}, 215-216, pages: 11-17, 2000 (article)

mms

[BibTex]

[BibTex]


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Interface-structure studies by atomic-resolution electron microscopy, order-disorder phenomena, and atomic diffusion in gas-phase-synthesized nanocrystalline solids

Schaefer, H.-E., Reimann, K., Straub, W., Phillipp, F., Tanimoto, H., Brossmann, U., Würschum, R.

{Materials Science and Engineering A}, 286, pages: 24-33, 2000 (article)

mms

[BibTex]

[BibTex]


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High-performance permanent magnets

Goll, D., Kronmüller, H.

{Naturwissenschaften}, 87, pages: 423-438, 2000 (article)

mms

[BibTex]

[BibTex]


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Nonlinear magnetoelastic coupling coefficients from simultaneous measurements of magnetostrictive stress and anisotropy in epitaxial magnetic films

Fähnle, M., Komelj, M.

{Journal of Applied Physics}, 88, pages: 2781-2786, 2000 (article)

mms

[BibTex]


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Reconstruction of the Mo(100) surface: a tight-binding study

Haas, H., Wang, C. Z., Ho, K. M., Fähnle, M., Elsässer, C.

{Surface Science}, 457, pages: L397-L403, 2000 (article)

mms

[BibTex]

[BibTex]


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The strain-softening phenomenon of icosahedral Al-Pd-Mn single quasicrystals

Brunner, D., Plachke, D., Carstanjen, H. D.

{Materials Science and Engineering A}, 294-296, pages: 773-776, 2000 (article)

mms

[BibTex]

[BibTex]


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Corrosion behaviour of the protective and decorative TiN coatings on large area steel strips

Vershinin, N., Filonov, K., Straumal, B., Gust, W., Wiener, I., Rabkin, E., Kazakevich, A.

{Surface and Coatings Technology}, 125, pages: 229-232, 2000 (article)

mms

[BibTex]

[BibTex]


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Influence of substrate irradiation on critical density and microstructure in YBCO thin films

Leonhardt, S., Albrecht, J., Warthmann, R., Habermeier, H.-U., Kronmüller, H.

{Physica C}, 341-348, pages: 1979-1980, 2000 (article)

mms

[BibTex]

[BibTex]


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Channeling of high-energy particles in bent crystals - experiments at the CERN SPS

Baurichter, A., Biino, C., Clement, M., Doble, N., Elsener, K., Fidecaro, G., Freund, A., Gatignon, L., Grafström, P., Gyr, M., Hage-Ali, M., Herr, W., Keppler, P., Kirsebom, K., Klem, J., Major, J., Medenwaldt, R., Mikkelsen, U., Moller, S. P., Siffert, P., Uggerhoj, E., Vilakazi, Z. Z., Weisse, E.

{Nuclear Instruments and Methods in Physics Research B}, 164-165, pages: 27-43, 2000 (article)

mms

[BibTex]

[BibTex]


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Magnetoelastic effects in ultrathin epitaxial Ni films: An ab-initio study

Komelj, M., Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 222, pages: L 245-L 250, 2000 (article)

mms

[BibTex]

[BibTex]


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Evidence for near-grain boundary lattice rotations in an Fe(Si) alloy.

Rabkin, E., Semenov, V., Bischoff, E.

{Zeitschrift f\"ur Metallkunde}, 91, pages: 165-170, 2000 (article)

mms

[BibTex]

[BibTex]


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Electron focusing in metals and semimetals

Heil, J., Böhm, A., Gröger, A., Primke, M., Wyder, P., Keppler, P., Major, J., Bender, H., Schönherr, E., Wendel, H., Wolf, B., Würz, U., Grill, W., Herrenberger, S., Knauth, S., Lenzner, J.

{Physics Reports}, 323, pages: 387-455, 2000 (article)

mms

[BibTex]

[BibTex]


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Analysis of the electronic structure of intermetallic compounds and application to structural defects in B2 phases

Börnsen, N., Meyer, B., Bester, G., Fähnle, M.

{Journal of Alloys and Compounds}, 308, pages: 1-14, 2000 (article)

mms

[BibTex]

[BibTex]


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Melt-spun precipitation-hardened Sm2(Co,Cu,Fe,Zr)17 magnets with abnormal temperature dependence of coercivity

Goll, D., Kleinschroth, I., Sigle, W., Kronmüller, H.

{Applied Physics Letters}, 76, pages: 1054-1056, 2000 (article)

mms

[BibTex]

[BibTex]


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Hydrogen-induced phase transition of GdZn1-xMgx compounds

Reule, H., Hirscher, M.

{Journal of Alloys and Compounds}, 298, pages: 1-8, 2000 (article)

mms

[BibTex]

[BibTex]


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The influence of a finite bandwidth on the Verwey transition in magnetite

Brabers, J. H. V. J., Walz, F., Kronmüller, H.

{Journal of Physics: Condensed Matter}, 12, pages: 5437-5452, 2000 (article)

mms

[BibTex]

[BibTex]


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Influcence of vortex-vortex interaction on critical currents across low-angle grain boundaries in YBa2Cu3O7-δ

Albrecht, J., Leonhardt, S., Kronmüller, H.

{Physical Review B}, 63, 2000 (article)

mms

[BibTex]

[BibTex]


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Symmetrical Tilt Grain boundaries in body-centred cubic transition metals: An ab-initio local-density-functional study

Ochs, T., Beck, O., Elsässer, C., Meyer, B.

{Philosophical Magazine A}, 80, pages: 351-372, 2000 (article)

mms

[BibTex]

[BibTex]


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The liquid ferromagnet Co80Pd20 and its critical exponent γ

Bührer, C., Beckmann, M., Fähnle, M., Maier, K.

{Journal of Magnetism and Magnetic Materials}, 212, pages: 211-224, 2000 (article)

mms

[BibTex]

[BibTex]


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Irreversible magnetization processes in a soft magnetic platelet

Hertel, R., Kronmüller, H.

{Physica B}, 275, pages: 1-4, 2000 (article)

mms

[BibTex]

[BibTex]


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Measurement of the Zener relaxation in high-purity FeCr single crystals

Hirscher, M., Brossmann, U., Henes, R.

{Materials Transactions, JIM}, 41, pages: 82-86, 2000 (article)

mms

[BibTex]

[BibTex]


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Ab-initio statistical mechanics for alloy phase diagrams and ordering phenomena including the effect of vacancies

Lechermann, F., Fähnle, M.

{Physical Review B}, 63, 2000 (article)

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[BibTex]


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Reactions in TiO2/Ti3Al and TiO2/TiAl bilayers: Application of target-factor analysis in auger electron spectroscopy

van Lier, J., Baretzky, B., Zalar, A., Mittemeijer, E. J.

{Surface and Interface Analysis}, 30, pages: 124-129, 2000 (article)

mms

[BibTex]

[BibTex]


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Ab-initio treatment of noncollinear spin systems within the atomic-sphere approximation and beyond

Grotheer, O., Ederer, C., Fähnle, M.

{Physical Review B}, 62, pages: 5601-5608, 2000 (article)

mms

[BibTex]

[BibTex]


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Is d-Al-Cu-Co a random tiling?

Zeger, G., Plachke, D., Carstanjen, H. D., Trebin, H. R.

{Materials Science and Engineering A}, 294, pages: 291-294, 2000 (article)

mms

[BibTex]

[BibTex]


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Nonlinear magnetoelastic coupling coefficients in Fe from an ab-initio calculation

Komelj, M., Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 220, pages: L 7-L 12, 2000 (article)

mms

[BibTex]

[BibTex]


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Current densities in low-angle grain boundaries of YBCO

Albrecht, J., Warthmann, R., Leonhardt, S., Kronmüller, H.

{Physica C}, 341-348, pages: 1459-1460, 2000 (article)

mms

[BibTex]

[BibTex]


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The hydrogen desorption kinetics of Pd-coated LaNi5-type films

Cuevas, F., Hirscher, M.

{Journal of Alloys and Compounds}, 313, pages: 269-275, 2000 (article)

mms

[BibTex]

[BibTex]


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The structure of the trihydride GdH3

Ellner, M., Reule, H., Mittemeijer, E. J.

{Journal of Alloys and Compounds}, 309, pages: 127-131, 2000 (article)

mms

[BibTex]

[BibTex]


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Corrosion resistance of the vacuum arc deposited Ti, TiN and TiO2 coatings on large area glass substrates

Vershinin, N., Filonov, K., Straumal, B., Gust, W., Dimitriou, R., Kovalev, A., Camacho, J.

{Surface and Coatings Technology}, 125, pages: 223-228, 2000 (article)

mms

[BibTex]

[BibTex]


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Is the insulator-metal transition in perovskites associated with the bulk magnetic phase transition?

Baszynski, J., Walz, F., Tolinski, T.

{Sensors and Actuators}, 81, pages: 37-39, 2000 (article)

mms

[BibTex]

[BibTex]


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Correlated molecular-field theory of amorphous ferromagnets and the Gibbs free energy

Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 210, pages: L 1-L 4, 2000 (article)

mms

[BibTex]

[BibTex]


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Pinning mechanism of vortices at antiphase boundaries in YBa2Cu3O7-δ

Jooss, C., Warthmann, R., Kronmüller, H.

{Physical Review B}, 61, pages: 12433-12446, 2000 (article)

mms

[BibTex]

[BibTex]


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Spectral distribution of activation energies in YBa2Cu3O7-δthin films

Warthmann, R., Albrecht, J., Kronmüller, H., Joos, C.

{Physical Review B}, 62, pages: 15226-15229, 2000 (article)

mms

[BibTex]

[BibTex]


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Ab-initio calculation of the formation and migration energies for Monovacancies in Mg

Krimmel, H., Fähnle, M.

{Physical Review B}, 62, pages: 5489-5491, 2000 (article)

mms

[BibTex]

[BibTex]


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Investigation of strain softening of icosahedral AlPdMn single quasicrystals

Brunner, D., Plachke, D., Carstanjen, H. D.

{Physica Status Solidi (A)}, 177, pages: 203-217, 2000 (article)

mms

[BibTex]

[BibTex]


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Formation and evolution of the transverse anisotropy with nanocrystallization in amorphous Fe73.5CuNb3Si13.5B9 ribbons

Guo, H. Q., Kronmüller, H., Dragon, T., Cheng, Z. H., Shen, B. G.

{Physical Review}, 62, pages: 5760-5764, 2000 (article)

mms

[BibTex]

[BibTex]


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Deflection of 32.8 TeV/c fully stripped Pb ions by means of a bent Si crystal

Biino, C., Clement, M., Doble, N., Elsener, K., Gatignon, L., Grafström, P., Herr, W., Keppler, P., Major, J., Mikkelsen, U., Taratin, A., Velasco, M.

{Nuclear Instruments and Methods in Physics Research B}, 160, pages: 536-543, 2000 (article)

mms

[BibTex]

[BibTex]


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Replacing muons by protons: polarized beam NMR

Schüth, J., Eversheim, P.-D., Herzog, P., Maier, K., Majer, G., Meyer, P., Roduner, E.

{Physica B}, 289-290, pages: 672-675, 2000 (article)

mms

[BibTex]

[BibTex]