Header logo is


2020


no image
Kernel Conditional Moment Test via Maximum Moment Restriction

Muandet, K., Jitkrittum, W., Kübler, J. M.

Proceedings of the 36th International Conference on Uncertainty in Artificial Intelligence (UAI), August 2020 (conference) Accepted

ei

[BibTex]

2020


[BibTex]


no image
Bayesian Online Prediction of Change Points

Agudelo-España, D., Gomez-Gonzalez, S., Bauer, S., Schölkopf, B., Peters, J.

Proceedings of the 36th International Conference on Uncertainty in Artificial Intelligence (UAI), August 2020 (conference) Accepted

ei

[BibTex]

[BibTex]


no image
Algorithmic Recourse: from Counterfactual Explanations to Interventions

Karimi, A., Schölkopf, B., Valera, I.

37th International Conference on Machine Learning (ICML), July 2020 (conference) Submitted

ei plg

[BibTex]

[BibTex]


no image
Model-Agnostic Counterfactual Explanations for Consequential Decisions

Karimi, A., Barthe, G., Balle, B., Valera, I.

Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics (AISTATS), June 2020 (conference) Accepted

ei plg

arXiv [BibTex]

arXiv [BibTex]


no image
A Continuous-time Perspective for Modeling Acceleration in Riemannian Optimization

F Alimisis, F., Orvieto, A., Becigneul, G., Lucchi, A.

Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics (AISTATS), June 2020 (conference) Accepted

ei

[BibTex]

[BibTex]


no image
Kernel Conditional Density Operators

Schuster, I., Mollenhauer, M., Klus, S., Muandet, K.

Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics (AISTATS), Proceedings of Machine Learning Research, June 2020 (conference) Accepted

ei

[BibTex]

[BibTex]


Walking Control Based on Step Timing Adaptation
Walking Control Based on Step Timing Adaptation

Khadiv, M., Herzog, A., Moosavian, S. A. A., Righetti, L.

IEEE Transactions on Robotics, 36, pages: 629 - 643, IEEE, June 2020 (article)

Abstract
Step adjustment can improve the gait robustness of biped robots; however, the adaptation of step timing is often neglected as it gives rise to nonconvex problems when optimized over several footsteps. In this article, we argue that it is not necessary to optimize walking over several steps to ensure gait viability and show that it is sufficient to merely select the next step timing and location. Using this insight, we propose a novel walking pattern generator that optimally selects step location and timing at every control cycle. Our approach is computationally simple compared to standard approaches in the literature, yet guarantees that any viable state will remain viable in the future. We propose a swing foot adaptation strategy and integrate the pattern generator with an inverse dynamics controller that does not explicitly control the center of mass nor the foot center of pressure. This is particularly useful for biped robots with limited control authority over their foot center of pressure, such as robots with point feet or passive ankles. Extensive simulations on a humanoid robot with passive ankles demonstrate the capabilities of the approach in various walking situations, including external pushes and foot slippage, and emphasize the importance of step timing adaptation to stabilize walking.

mg

link (url) DOI [BibTex]

link (url) DOI [BibTex]


no image
A Kernel Mean Embedding Approach to Reducing Conservativeness in Stochastic Programming and Control

Zhu, J., Diehl, M., Schölkopf, B.

2nd Annual Conference on Learning for Dynamics and Control (L4DC), June 2020 (conference) Accepted

ei

arXiv [BibTex]

arXiv [BibTex]


Physical Variables Underlying Tactile Stickiness during Fingerpad Detachment
Physical Variables Underlying Tactile Stickiness during Fingerpad Detachment

Nam, S., Vardar, Y., Gueorguiev, D., Kuchenbecker, K. J.

Frontiers in Neuroscience, 14(235):1-14, April 2020 (article)

Abstract
One may notice a relatively wide range of tactile sensations even when touching the same hard, flat surface in similar ways. Little is known about the reasons for this variability, so we decided to investigate how the perceptual intensity of light stickiness relates to the physical interaction between the skin and the surface. We conducted a psychophysical experiment in which nine participants actively pressed their finger on a flat glass plate with a normal force close to 1.5 N and detached it after a few seconds. A custom-designed apparatus recorded the contact force vector and the finger contact area during each interaction as well as pre- and post-trial finger moisture. After detaching their finger, participants judged the stickiness of the glass using a nine-point scale. We explored how sixteen physical variables derived from the recorded data correlate with each other and with the stickiness judgments of each participant. These analyses indicate that stickiness perception mainly depends on the pre-detachment pressing duration, the time taken for the finger to detach, and the impulse in the normal direction after the normal force changes sign; finger-surface adhesion seems to build with pressing time, causing a larger normal impulse during detachment and thus a more intense stickiness sensation. We additionally found a strong between-subjects correlation between maximum real contact area and peak pull-off force, as well as between finger moisture and impulse.

hi

link (url) DOI Project Page [BibTex]


no image
Disentangling Factors of Variations Using Few Labels

Locatello, F., Tschannen, M., Bauer, S., Rätsch, G., Schölkopf, B., Bachem, O.

8th International Conference on Learning Representations (ICLR), April 2020 (conference)

ei

arXiv link (url) [BibTex]

arXiv link (url) [BibTex]


no image
Mixed-curvature Variational Autoencoders

Skopek, O., Ganea, O., Becigneul, G.

8th International Conference on Learning Representations (ICLR), April 2020 (conference)

ei

link (url) [BibTex]

link (url) [BibTex]


Non-linear interlinkages and key objectives amongst the Paris Agreement and the Sustainable Development Goals
Non-linear interlinkages and key objectives amongst the Paris Agreement and the Sustainable Development Goals

Laumann, F., von Kügelgen, J., Barahona, M.

ICLR 2020 Workshop "Tackling Climate Change with Machine Learning", April 2020 (conference)

ei

arXiv PDF [BibTex]

arXiv PDF [BibTex]


From Variational to Deterministic Autoencoders
From Variational to Deterministic Autoencoders

Ghosh*, P., Sajjadi*, M. S. M., Vergari, A., Black, M. J., Schölkopf, B.

8th International Conference on Learning Representations (ICLR) , April 2020, *equal contribution (conference) Accepted

Abstract
Variational Autoencoders (VAEs) provide a theoretically-backed framework for deep generative models. However, they often produce “blurry” images, which is linked to their training objective. Sampling in the most popular implementation, the Gaussian VAE, can be interpreted as simply injecting noise to the input of a deterministic decoder. In practice, this simply enforces a smooth latent space structure. We challenge the adoption of the full VAE framework on this specific point in favor of a simpler, deterministic one. Specifically, we investigate how substituting stochasticity with other explicit and implicit regularization schemes can lead to a meaningful latent space without having to force it to conform to an arbitrarily chosen prior. To retrieve a generative mechanism for sampling new data points, we propose to employ an efficient ex-post density estimation step that can be readily adopted both for the proposed deterministic autoencoders as well as to improve sample quality of existing VAEs. We show in a rigorous empirical study that regularized deterministic autoencoding achieves state-of-the-art sample quality on the common MNIST, CIFAR-10 and CelebA datasets.

ei ps

arXiv [BibTex]

arXiv [BibTex]


no image
On Mutual Information Maximization for Representation Learning

Tschannen, M., Djolonga, J., Rubenstein, P. K., Gelly, S., Lucic, M.

8th International Conference on Learning Representations (ICLR), April 2020 (conference) Accepted

ei

arXiv link (url) [BibTex]

arXiv link (url) [BibTex]


Towards causal generative scene models via competition of experts
Towards causal generative scene models via competition of experts

von Kügelgen*, J., Ustyuzhaninov*, I., Gehler, P., Bethge, M., Schölkopf, B.

ICLR 2020 Workshop "Causal Learning for Decision Making", April 2020, *equal contribution (conference)

ei

arXiv PDF [BibTex]

arXiv PDF [BibTex]


no image
Adaptation and Robust Learning of Probabilistic Movement Primitives

Gomez-Gonzalez, S., Neumann, G., Schölkopf, B., Peters, J.

IEEE Transactions on Robotics, 36(2):366-379, IEEE, March 2020 (article)

ei

arXiv DOI Project Page [BibTex]

arXiv DOI Project Page [BibTex]


Learning to Predict Perceptual Distributions of Haptic Adjectives
Learning to Predict Perceptual Distributions of Haptic Adjectives

Richardson, B. A., Kuchenbecker, K. J.

Frontiers in Neurorobotics, 13(116):1-16, Febuary 2020 (article)

Abstract
When humans touch an object with their fingertips, they can immediately describe its tactile properties using haptic adjectives, such as hardness and roughness; however, human perception is subjective and noisy, with significant variation across individuals and interactions. Recent research has worked to provide robots with similar haptic intelligence but was focused on identifying binary haptic adjectives, ignoring both attribute intensity and perceptual variability. Combining ordinal haptic adjective labels gathered from human subjects for a set of 60 objects with features automatically extracted from raw multi-modal tactile data collected by a robot repeatedly touching the same objects, we designed a machine-learning method that incorporates partial knowledge of the distribution of object labels into training; then, from a single interaction, it predicts a probability distribution over the set of ordinal labels. In addition to analyzing the collected labels (10 basic haptic adjectives) and demonstrating the quality of our method's predictions, we hold out specific features to determine the influence of individual sensor modalities on the predictive performance for each adjective. Our results demonstrate the feasibility of modeling both the intensity and the variation of haptic perception, two crucial yet previously neglected components of human haptic perception.

hi

DOI Project Page [BibTex]


no image
Exercising with Baxter: Preliminary Support for Assistive Social-Physical Human-Robot Interaction

Fitter, N. T., Mohan, M., Kuchenbecker, K. J., Johnson, M. J.

Journal of NeuroEngineering and Rehabilitation, 17(19), Febuary 2020 (article)

Abstract
Background: The worldwide population of older adults will soon exceed the capacity of assisted living facilities. Accordingly, we aim to understand whether appropriately designed robots could help older adults stay active at home. Methods: Building on related literature as well as guidance from experts in game design, rehabilitation, and physical and occupational therapy, we developed eight human-robot exercise games for the Baxter Research Robot, six of which involve physical human-robot contact. After extensive iteration, these games were tested in an exploratory user study including 20 younger adult and 20 older adult users. Results: Only socially and physically interactive games fell in the highest ranges for pleasantness, enjoyment, engagement, cognitive challenge, and energy level. Our games successfully spanned three different physical, cognitive, and temporal challenge levels. User trust and confidence in Baxter increased significantly between pre- and post-study assessments. Older adults experienced higher exercise, energy, and engagement levels than younger adults, and women rated the robot more highly than men on several survey questions. Conclusions: The results indicate that social-physical exercise with a robot is more pleasant, enjoyable, engaging, cognitively challenging, and energetic than similar interactions that lack physical touch. In addition to this main finding, researchers working in similar areas can build on our design practices, our open-source resources, and the age-group and gender differences that we found.

hi

DOI Project Page [BibTex]

DOI Project Page [BibTex]


no image
Real Time Trajectory Prediction Using Deep Conditional Generative Models

Gomez-Gonzalez, S., Prokudin, S., Schölkopf, B., Peters, J.

IEEE Robotics and Automation Letters, 5(2):970-976, IEEE, January 2020 (article)

ei ps

arXiv DOI [BibTex]

arXiv DOI [BibTex]


no image
More Powerful Selective Kernel Tests for Feature Selection

Lim, J. N., Yamada, M., Jitkrittum, W., Terada, Y., Matsui, S., Shimodaira, H.

Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics (AISTATS), 2020 (conference) To be published

ei

arXiv [BibTex]

arXiv [BibTex]


no image
Computationally Tractable Riemannian Manifolds for Graph Embeddings

Cruceru, C., Becigneul, G., Ganea, O.

37th International Conference on Machine Learning (ICML), 2020 (conference) Submitted

ei

[BibTex]

[BibTex]


no image
A Real-Robot Dataset for Assessing Transferability of Learned Dynamics Models

Agudelo-España, D., Zadaianchuk, A., Wenk, P., Garg, A., Akpo, J., Grimminger, F., Viereck, J., Naveau, M., Righetti, L., Martius, G., Krause, A., Schölkopf, B., Bauer, S., Wüthrich, M.

IEEE International Conference on Robotics and Automation (ICRA), 2020 (conference) Accepted

am al ei mg

Project Page PDF [BibTex]

Project Page PDF [BibTex]


no image
An Adaptive Optimizer for Measurement-Frugal Variational Algorithms

Kübler, J. M., Arrasmith, A., Cincio, L., Coles, P. J.

Quantum, 4, pages: 263, 2020 (article)

ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


no image
Practical Accelerated Optimization on Riemannian Manifolds

F Alimisis, F., Orvieto, A., Becigneul, G., Lucchi, A.

37th International Conference on Machine Learning (ICML), 2020 (conference) Submitted

ei

[BibTex]

[BibTex]


no image
Fair Decisions Despite Imperfect Predictions

Kilbertus, N., Gomez Rodriguez, M., Schölkopf, B., Muandet, K., Valera, I.

Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics (AISTATS), 2020 (conference) Accepted

ei plg

[BibTex]

[BibTex]


no image
Counterfactual Mean Embedding

Muandet, K., Kanagawa, M., Saengkyongam, S., Marukatat, S.

Journal of Machine Learning Research, 2020 (article) Accepted

ei

[BibTex]

[BibTex]


no image
Constant Curvature Graph Convolutional Networks

Bachmann*, G., Becigneul*, G., Ganea, O.

37th International Conference on Machine Learning (ICML), 2020, *equal contribution (conference) Submitted

ei

[BibTex]

[BibTex]


no image
Divide-and-Conquer Monte Carlo Tree Search for goal directed planning

Parascandolo*, G., Buesing*, L., Merel, J., Hasenclever, L., Aslanides, J., Hamrick, J. B., Heess, N., Neitz, A., Weber, T.

2020, *equal contribution (conference) Submitted

ei

arXiv [BibTex]

arXiv [BibTex]

2010


no image
Learning Table Tennis with a Mixture of Motor Primitives

Mülling, K., Kober, J., Peters, J.

In Proceedings of the 10th IEEE-RAS International Conference on Humanoid Robots (Humanoids 2010), pages: 411-416, IEEE, Piscataway, NJ, USA, 10th IEEE-RAS International Conference on Humanoid Robots (Humanoids), December 2010 (inproceedings)

Abstract
Table tennis is a sufficiently complex motor task for studying complete skill learning systems. It consists of several elementary motions and requires fast movements, accurate control, and online adaptation. To represent the elementary movements needed for robot table tennis, we rely on dynamic systems motor primitives (DMP). While such DMPs have been successfully used for learning a variety of simple motor tasks, they only represent single elementary actions. In order to select and generalize among different striking movements, we present a new approach, called Mixture of Motor Primitives that uses a gating network to activate appropriate motor primitives. The resulting policy enables us to select among the appropriate motor primitives as well as to generalize between them. In order to obtain a fully learned robot table tennis setup, we also address the problem of predicting the necessary context information, i.e., the hitting point in time and space where we want to hit the ball. We show that the resulting setup was capable of playing rudimentary table tennis using an anthropomorphic robot arm.

ei

Web DOI [BibTex]

2010


Web DOI [BibTex]


no image
Learning an interactive segmentation system

Nickisch, H., Rother, C., Kohli, P., Rhemann, C.

In Proceedings of the Seventh Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP 2010), pages: 274-281, (Editors: Chellapa, R. , P. Anandan, A. N. Rajagopalan, P. J. Narayanan, P. Torr), ACM Press, Nw York, NY, USA, Seventh Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2010 (inproceedings)

Abstract
Many successful applications of computer vision to image or video manipulation are interactive by nature. However, parameters of such systems are often trained neglecting the user. Traditionally, interactive systems have been treated in the same manner as their fully automatic counterparts. Their performance is evaluated by computing the accuracy of their solutions under some fixed set of user interactions. This paper proposes a new evaluation and learning method which brings the user in the loop. It is based on the use of an active robot user -- a simulated model of a human user. We show how this approach can be used to evaluate and learn parameters of state-of-the-art interactive segmentation systems. We also show how simulated user models can be integrated into the popular max-margin method for parameter learning and propose an algorithm to solve the resulting optimisation problem.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Causal relationships between frequency bands of extracellular signals in visual cortex revealed by an information theoretic analysis

Besserve, M., Schölkopf, B., Logothetis, N., Panzeri, S.

Journal of Computational Neuroscience, 29(3):547-566, December 2010 (article)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


no image
Tackling Box-Constrained Optimization via a New Projected Quasi-Newton Approach

Kim, D., Sra, S., Dhillon, I.

SIAM Journal on Scientific Computing, 32(6):3548-3563 , December 2010 (article)

Abstract
Numerous scientific applications across a variety of fields depend on box-constrained convex optimization. Box-constrained problems therefore continue to attract research interest. We address box-constrained (strictly convex) problems by deriving two new quasi-Newton algorithms. Our algorithms are positioned between the projected-gradient [J. B. Rosen, J. SIAM, 8 (1960), pp. 181–217] and projected-Newton [D. P. Bertsekas, SIAM J. Control Optim., 20 (1982), pp. 221–246] methods. We also prove their convergence under a simple Armijo step-size rule. We provide experimental results for two particular box-constrained problems: nonnegative least squares (NNLS), and nonnegative Kullback–Leibler (NNKL) minimization. For both NNLS and NNKL our algorithms perform competitively as compared to well-established methods on medium-sized problems; for larger problems our approach frequently outperforms the competition.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Algorithmen zum Automatischen Erlernen von Motorfähigkeiten

Peters, J., Kober, J., Schaal, S.

at - Automatisierungstechnik, 58(12):688-694, December 2010 (article)

Abstract
Robot learning methods which allow autonomous robots to adapt to novel situations have been a long standing vision of robotics, artificial intelligence, and cognitive sciences. However, to date, learning techniques have yet to fulfill this promise as only few methods manage to scale into the high-dimensional domains of manipulator robotics, or even the new upcoming trend of humanoid robotics. If possible, scaling was usually only achieved in precisely pre-structured domains. In this paper, we investigate the ingredients for a general approach policy learning with the goal of an application to motor skill refinement in order to get one step closer towards human-like performance. For doing so, we study two major components for such an approach, i. e., firstly, we study policy learning algorithms which can be applied in the general setting of motor skill learning, and, secondly, we study a theoretically well-founded general approach to representing the required control structures for task representation and execution.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Online algorithms for submodular minimization with combinatorial constraints

Jegelka, S., Bilmes, J.

In pages: 1-6, NIPS Workshop on Discrete Optimization in Machine Learning: Structures, Algorithms and Applications (DISCML), December 2010 (inproceedings)

Abstract
Building on recent results for submodular minimization with combinatorial constraints, and on online submodular minimization, we address online approximation algorithms for submodular minimization with combinatorial constraints. We discuss two types of algorithms and outline approximation algorithms that integrate into those.

ei

PDF Web [BibTex]

PDF Web [BibTex]


no image
Using an Infinite Von Mises-Fisher Mixture Model to Cluster Treatment Beam Directions in External Radiation Therapy

Bangert, M., Hennig, P., Oelfke, U.

In pages: 746-751 , (Editors: Draghici, S. , T.M. Khoshgoftaar, V. Palade, W. Pedrycz, M.A. Wani, X. Zhu), IEEE, Piscataway, NJ, USA, Ninth International Conference on Machine Learning and Applications (ICMLA), December 2010 (inproceedings)

Abstract
We present a method for fully automated selection of treatment beam ensembles for external radiation therapy. We reformulate the beam angle selection problem as a clustering problem of locally ideal beam orientations distributed on the unit sphere. For this purpose we construct an infinite mixture of von Mises-Fisher distributions, which is suited in general for density estimation from data on the D-dimensional sphere. Using a nonparametric Dirichlet process prior, our model infers probability distributions over both the number of clusters and their parameter values. We describe an efficient Markov chain Monte Carlo inference algorithm for posterior inference from experimental data in this model. The performance of the suggested beam angle selection framework is illustrated for one intra-cranial, pancreas, and prostate case each. The infinite von Mises-Fisher mixture model (iMFMM) creates between 18 and 32 clusters, depending on the patient anatomy. This suggests to use the iMFMM directly for beam ensemble selection in robotic radio surgery, or to generate low-dimensional input for both subsequent optimization of trajectories for arc therapy and beam ensemble selection for conventional radiation therapy.

ei pn

Web DOI [BibTex]

Web DOI [BibTex]


no image
PAC-Bayesian Analysis of Co-clustering and Beyond

Seldin, Y., Tishby, N.

Journal of Machine Learning Research, 11, pages: 3595-3646, December 2010 (article)

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


no image
Multi-agent random walks for local clustering

Alamgir, M., von Luxburg, U.

In Proceedings of the IEEE International Conference on Data Mining (ICDM 2010), pages: 18-27, (Editors: Webb, G. I., B. Liu, C. Zhang, D. Gunopulos, X. Wu), IEEE, Piscataway, NJ, USA, IEEE International Conference on Data Mining (ICDM), December 2010 (inproceedings)

Abstract
We consider the problem of local graph clustering where the aim is to discover the local cluster corresponding to a point of interest. The most popular algorithms to solve this problem start a random walk at the point of interest and let it run until some stopping criterion is met. The vertices visited are then considered the local cluster. We suggest a more powerful alternative, the multi-agent random walk. It consists of several “agents” connected by a fixed rope of length l. All agents move independently like a standard random walk on the graph, but they are constrained to have distance at most l from each other. The main insight is that for several agents it is harder to simultaneously travel over the bottleneck of a graph than for just one agent. Hence, the multi-agent random walk has less tendency to mistakenly merge two different clusters than the original random walk. In our paper we analyze the multi-agent random walk theoretically and compare it experimentally to the major local graph clustering algorithms from the literature. We find that our multi-agent random walk consistently outperforms these algorithms.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Effects of Packet Losses to Stability in Bilateral Teleoperation Systems

Hong, A., Cho, JH., Lee, DY.

In pages: 1043-1044, Korean Society of Mechanical Engineers, Seoul, South Korea, KSME Fall Annual Meeting, November 2010 (inproceedings)

ei

[BibTex]

[BibTex]


no image
Gaussian Processes for Machine Learning (GPML) Toolbox

Rasmussen, C., Nickisch, H.

Journal of Machine Learning Research, 11, pages: 3011-3015, November 2010 (article)

Abstract
The GPML toolbox provides a wide range of functionality for Gaussian process (GP) inference and prediction. GPs are specified by mean and covariance functions; we offer a library of simple mean and covariance functions and mechanisms to compose more complex ones. Several likelihood functions are supported including Gaussian and heavy-tailed for regression as well as others suitable for classification. Finally, a range of inference methods is provided, including exact and variational inference, Expectation Propagation, and Laplace's method dealing with non-Gaussian likelihoods and FITC for dealing with large regression tasks.

ei

Web [BibTex]

Web [BibTex]


no image
Combining Real-Time Brain-Computer Interfacing and Robot Control for Stroke Rehabilitation

Gomez Rodriguez, M., Peters, J., Hill, J., Gharabaghi, A., Schölkopf, B., Grosse-Wentrup, M.

In Proceedings of SIMPAR 2010 Workshops, pages: 59-63, Brain-Computer Interface Workshop at SIMPAR: 2nd International Conference on Simulation, Modeling, and Programming for Autonomous Robots, November 2010 (inproceedings)

Abstract
Brain-Computer Interfaces based on electrocorticography (ECoG) or electroencephalography (EEG), in combination with robot-assisted active physical therapy, may support traditional rehabilitation procedures for patients with severe motor impairment due to cerebrovascular brain damage caused by stroke. In this short report, we briefly review the state-of-the art in this exciting new field, give an overview of the work carried out at the Max Planck Institute for Biological Cybernetics and the University of T{\"u}bingen, and discuss challenges that need to be addressed in order to move from basic research to clinical studies.

ei

PDF Web [BibTex]

PDF Web [BibTex]


no image
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution

Armache, J-P., Jarasch, A., Anger, AM., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Söding, J., Westhof, E., Wilson, DN., Beckmann, R.

Proceedings of the National Academy of Sciences of the United States of America, 107(46):19748-19753, November 2010 (article)

Abstract
Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES–ES and r-protein–ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Policy gradient methods

Peters, J.

Scholarpedia, 5(11):3698, November 2010 (article)

Abstract
Policy gradient methods are a type of reinforcement learning techniques that rely upon optimizing parametrized policies with respect to the expected return (long-term cumulative reward) by gradient descent. They do not suffer from many of the problems that have been marring traditional reinforcement learning approaches such as the lack of guarantees of a value function, the intractability problem resulting from uncertain state information and the complexity arising from continuous states & actions.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome

Armache, J-P., Jarasch, A., Anger, AM., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Söding, J., Westhof, E., Wilson, DN., Beckmann, R.

Proceedings of the National Academy of Sciences of the United States of America, 107(46):19754-19759, November 2010 (article)

Abstract
Protein synthesis in all living organisms occurs on ribonucleoprotein particles, called ribosomes. Despite the universality of this process, eukaryotic ribosomes are significantly larger in size than their bacterial counterparts due in part to the presence of 80 r proteins rather than 54 in bacteria. Using cryoelectron microscopy reconstructions of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution, together with a 6.1-Å map of a translating Saccharomyces cerevisiae 80S ribosome, we have localized and modeled 74/80 (92.5%) of the ribosomal proteins, encompassing 12 archaeal/eukaryote-specific small subunit proteins as well as the complete complement of the ribosomal proteins of the eukaryotic large subunit. Near-complete atomic models of the 80S ribosome provide insights into the structure, function, and evolution of the eukaryotic translational apparatus.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Spatio-Spectral Remote Sensing Image Classification With Graph Kernels

Camps-Valls, G., Shervashidze, N., Borgwardt, K.

IEEE Geoscience and Remote Sensing Letters, 7(4):741-745, October 2010 (article)

Abstract
This letter presents a graph kernel for spatio-spectral remote sensing image classification with support vector machines (SVMs). The method considers higher order relations in the neighborhood (beyond pairwise spatial relations) to iteratively compute a kernel matrix for SVM learning. The proposed kernel is easy to compute and constitutes a powerful alternative to existing approaches. The capabilities of the method are illustrated in several multi- and hyperspectral remote sensing images acquired over both urban and agricultural areas.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Causal Inference Using the Algorithmic Markov Condition

Janzing, D., Schölkopf, B.

IEEE Transactions on Information Theory, 56(10):5168-5194, October 2010 (article)

Abstract
Inferring the causal structure that links $n$ observables is usually based upon detecting statistical dependences and choosing simple graphs that make the joint measure Markovian. Here we argue why causal inference is also possible when the sample size is one. We develop a theory how to generate causal graphs explaining similarities between single objects. To this end, we replace the notion of conditional stochastic independence in the causal Markov condition with the vanishing of conditional algorithmic mutual information and describe the corresponding causal inference rules. We explain why a consistent reformulation of causal inference in terms of algorithmic complexity implies a new inference principle that takes into account also the complexity of conditional probability densities, making it possible to select among Markov equivalent causal graphs. This insight provides a theoretical foundation of a heuristic principle proposed in earlier work. We also sketch some ideas on how to replace Kolmogorov complexity with decidable complexity criteria. This can be seen as an algorithmic analog of replacing the empirically undecidable question of statistical independence with practical independence tests that are based on implicit or explicit assumptions on the underlying distribution.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]