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2001


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Variationsverfahren zur Untersuchung von Grundzustandseigenschaften des Ein-Band Hubbard-Modells

Eichhorn, J.

Biologische Kybernetik, Technische Universität Dresden, Dresden/Germany, May 2001 (diplomathesis)

Abstract
Using different modifications of a new variational approach, statical groundstate properties of the one-band Hubbard model such as energy and staggered magnetisation are calculated. By taking into account additional fluctuations, the method ist gradually improved so that a very good description of the energy in one and two dimensions can be achieved. After a detailed discussion of the application in one dimension, extensions for two dimensions are introduced. By use of a modified version of the variational ansatz in particular a description of the quantum phase transition for the magnetisation should be possible.

ei

PostScript [BibTex]

2001


PostScript [BibTex]


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Unsupervised Segmentation and Classification of Mixtures of Markovian Sources

Seldin, Y., Bejerano, G., Tishby, N.

In The 33rd Symposium on the Interface of Computing Science and Statistics (Interface 2001 - Frontiers in Data Mining and Bioinformatics), pages: 1-15, 33rd Symposium on the Interface of Computing Science and Statistics (Interface - Frontiers in Data Mining and Bioinformatics), 2001 (inproceedings)

Abstract
We describe a novel algorithm for unsupervised segmentation of sequences into alternating Variable Memory Markov sources, first presented in [SBT01]. The algorithm is based on competitive learning between Markov models, when implemented as Prediction Suffix Trees [RST96] using the MDL principle. By applying a model clustering procedure, based on rate distortion theory combined with deterministic annealing, we obtain a hierarchical segmentation of sequences between alternating Markov sources. The method is applied successfully to unsupervised segmentation of multilingual texts into languages where it is able to infer correctly both the number of languages and the language switching points. When applied to protein sequence families (results of the [BSMT01] work), we demonstrate the method‘s ability to identify biologically meaningful sub-sequences within the proteins, which correspond to signatures of important functional sub-units called domains. Our approach to proteins classification (through the obtained signatures) is shown to have both conceptual and practical advantages over the currently used methods.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov Sources

Seldin, Y., Bejerano, G., Tishby, N.

In In the proceeding of the 18th International Conference on Machine Learning (ICML 2001), pages: 513-520, 18th International Conference on Machine Learning (ICML), 2001 (inproceedings)

Abstract
We present a novel information theoretic algorithm for unsupervised segmentation of sequences into alternating Variable Memory Markov sources. The algorithm is based on competitive learning between Markov models, when implemented as Prediction Suffix Trees (Ron et al., 1996) using the MDL principle. By applying a model clustering procedure, based on rate distortion theory combined with deterministic annealing, we obtain a hierarchical segmentation of sequences between alternating Markov sources. The algorithm seems to be self regulated and automatically avoids over segmentation. The method is applied successfully to unsupervised segmentation of multilingual texts into languages where it is able to infer correctly both the number of languages and the language switching points. When applied to protein sequence families, we demonstrate the method‘s ability to identify biologically meaningful sub-sequences within the proteins, which correspond to important functional sub-units called domains.

ei

PDF [BibTex]

PDF [BibTex]

2000


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Choosing nu in support vector regression with different noise models — theory and experiments

Chalimourda, A., Schölkopf, B., Smola, A.

In Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks, IJCNN 2000, Neural Computing: New Challenges and Perspectives for the New Millennium, IEEE, International Joint Conference on Neural Networks, 2000 (inproceedings)

ei

[BibTex]

2000


[BibTex]


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An Introduction to Kernel-Based Learning Algorithms

Müller, K., Mika, S., Rätsch, G., Tsuda, K., Schölkopf, B.

In Handbook of Neural Network Signal Processing, 4, (Editors: Yu Hen Hu and Jang-Neng Hwang), CRC Press, 2000 (inbook)

ei

[BibTex]

[BibTex]

1999


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Engineering Support Vector Machine Kernels That Recognize Translation Initiation Sites in DNA

Zien, A., Rätsch, G., Mika, S., Schölkopf, B., Lemmen, C., Smola, A., Lengauer, T., Müller, K.

In German Conference on Bioinformatics (GCB 1999), October 1999 (inproceedings)

Abstract
In order to extract protein sequences from nucleotide sequences, it is an important step to recognize points from which regions encoding pro­ teins start, the so­called translation initiation sites (TIS). This can be modeled as a classification prob­ lem. We demonstrate the power of support vector machines (SVMs) for this task, and show how to suc­ cessfully incorporate biological prior knowledge by engineering an appropriate kernel function.

ei

Web [BibTex]

1999


Web [BibTex]

1998


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Prior knowledge in support vector kernels

Schölkopf, B., Simard, P., Smola, A., Vapnik, V.

In Advances in Neural Information Processing Systems 10, pages: 640-646 , (Editors: M Jordan and M Kearns and S Solla ), MIT Press, Cambridge, MA, USA, Eleventh Annual Conference on Neural Information Processing (NIPS), June 1998 (inproceedings)

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PDF Web [BibTex]

1998


PDF Web [BibTex]


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From regularization operators to support vector kernels

Smola, A., Schölkopf, B.

In Advances in Neural Information Processing Systems 10, pages: 343-349, (Editors: M Jordan and M Kearns and S Solla), MIT Press, Cambridge, MA, USA, 11th Annual Conference on Neural Information Processing (NIPS), June 1998 (inproceedings)

ei

PDF Web [BibTex]

PDF Web [BibTex]