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2020


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Sampling on networks: estimating spectral centrality measures and their impact in evaluating other relevant network measures

Ruggeri, N., De Bacco, C.

Applied Network Science, 5:81, October 2020 (article)

Abstract
We perform an extensive analysis of how sampling impacts the estimate of several relevant network measures. In particular, we focus on how a sampling strategy optimized to recover a particular spectral centrality measure impacts other topological quantities. Our goal is on one hand to extend the analysis of the behavior of TCEC [Ruggeri2019], a theoretically-grounded sampling method for eigenvector centrality estimation. On the other hand, to demonstrate more broadly how sampling can impact the estimation of relevant network properties like centrality measures different than the one aimed at optimizing, community structure and node attribute distribution. Finally, we adapt the theoretical framework behind TCEC for the case of PageRank centrality and propose a sampling algorithm aimed at optimizing its estimation. We show that, while the theoretical derivation can be suitably adapted to cover this case, the resulting algorithm suffers of a high computational complexity that requires further approximations compared to the eigenvector centrality case.

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Code Preprint pdf DOI [BibTex]


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Optimal transport for multi-commodity routing on networks

Lonardi, A., Facca, E., Putti, M., De Bacco, C.

October 2020 (article) Submitted

Abstract
We present a model for finding optimal multi-commodity flows on networks based on optimal transport theory. The model relies on solving a dynamical system of equations. We prove that its stationary solution is equivalent to the solution of an optimization problem that generalizes the one-commodity framework. In particular, it generalizes previous results in terms of optimality, scaling, and phase transitions obtained in the one-commodity case. Remarkably, for a suitable range of parameters, the optimal topologies have loops. This is radically different to the one-commodity case, where within an analogous parameter range the optimal topologies are trees. This important result is a consequence of the extension of Kirkchoff's law to the multi-commodity case, which enforces the distinction between fluxes of the different commodities. Our results provide new insights into the nature and properties of optimal network topologies. In particular, they show that loops can arise as a consequence of distinguishing different flow types, and complement previous results where loops, in the one-commodity case, were arising as a consequence of imposing dynamical rules to the sources and sinks or when enforcing robustness to damage. Finally, we provide an efficient implementation for each of the two equivalent numerical frameworks, both of which achieve a computational complexity that is more efficient than that of standard optimization methods based on gradient descent. As a result, our model is not merely abstract but can be efficiently applied to large datasets. We give an example of concrete application by studying the network of the Paris metro.

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Code Preprint [BibTex]


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Community detection with node attributes in multilayer networks

Contisciani, M., Power, E. A., De Bacco, C.

Nature Scientific Reports, 10, pages: 15736, September 2020 (article)

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Code Preprint pdf [BibTex]

Code Preprint pdf [BibTex]


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Analytical classical density functionals from an equation learning network

Lin, S., Martius, G., Oettel, M.

The Journal of Chemical Physics, 152(2):021102, 2020, arXiv preprint \url{https://arxiv.org/abs/1910.12752} (article)

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Preprint_PDF DOI [BibTex]

Preprint_PDF DOI [BibTex]


Wearable and Stretchable Strain Sensors: Materials, Sensing Mechanisms, and Applications
Wearable and Stretchable Strain Sensors: Materials, Sensing Mechanisms, and Applications

Souri, H., Banerjee, H., Jusufi, A., Radacsi, N., Stokes, A. A., Park, I., Sitti, M., Amjadi, M.

Advanced Intelligent Systems, 2020 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Fish-like aquatic propulsion studied using a pneumatically-actuated soft-robotic model

Wolf, Z., Jusufi, A., Vogt, D. M., Lauder, G. V.

Bioinspiration & Biomimetics, 15(4):046008, Inst. of Physics, London, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Network extraction by routing optimization

Baptista, T. D., Leite, D., Facca, E., Putti, M., De Bacco, C.

2020 (article) In revision

Abstract
Routing optimization is a relevant problem in many contexts. Solving directly this type of optimization problem is often computationally unfeasible. Recent studies suggest that one can instead turn this problem into one of solving a dynamical system of equations, which can instead be solved efficiently using numerical methods. This results in enabling the acquisition of optimal network topologies from a variety of routing problems. However, the actual extraction of the solution in terms of a final network topology relies on numerical details which can prevent an accurate investigation of their topological properties. In this context, theoretical results are fully accessible only to an expert audience and ready-to-use implementations for non-experts are rarely available or insufficiently documented. In particular, in this framework, final graph acquisition is a challenging problem in-and-of-itself. Here we introduce a method to extract networks topologies from dynamical equations related to routing optimization under various parameters’ settings. Our method is made of three steps: first, it extracts an optimal trajectory by solving a dynamical system, then it pre-extracts a network and finally, it filters out potential redundancies. Remarkably, we propose a principled model to address the filtering in the last step, and give a quantitative interpretation in terms of a transport-related cost function. This principled filtering can be applied to more general problems such as network extraction from images, thus going beyond the scenarios envisioned in the first step. Overall, this novel algorithm allows practitioners to easily extract optimal network topologies by combining basic tools from numerical methods, optimization and network theory. Thus, we provide an alternative to manual graph extraction which allows a grounded extraction from a large variety of optimal topologies.

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Code Preprint [BibTex]

2019


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Sampling on Networks: Estimating Eigenvector Centrality on Incomplete Networks

Ruggeri, N., De Bacco, C.

International Conference on Complex Networks and Their Applications, November 2019 (article)

Abstract
We develop a new sampling method to estimate eigenvector centrality on incomplete networks. Our goalis to estimate this global centrality measure having at disposal a limited amount of data. This is the case inmany real-world scenarios where data collection is expensive, the network is too big for data storage capacityor only partial information is available. The sampling algorithm is theoretically grounded by results derivedfrom spectral approximation theory. We studied the problemon both synthetic and real data and tested theperformance comparing with traditional methods, such as random walk and uniform sampling. We show thatapproximations obtained from such methods are not always reliable and that our algorithm, while preservingcomputational scalability, improves performance under different error measures.

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Code Preprint pdf DOI [BibTex]

2019


Code Preprint pdf DOI [BibTex]


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Dynamics of beneficial epidemics

Berdahl, A., Brelsford, C., De Bacco, C., Dumas, M., Ferdinand, V., Grochow, J. A., nt Hébert-Dufresne, L., Kallus, Y., Kempes, C. P., Kolchinsky, A., Larremore, D. B., Libby, E., Power, E. A., A., S. C., Tracey, B. D.

Scientific Reports, 9, pages: 15093, October 2019 (article)

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DOI [BibTex]

DOI [BibTex]


Autonomous Identification and Goal-Directed Invocation of Event-Predictive Behavioral Primitives
Autonomous Identification and Goal-Directed Invocation of Event-Predictive Behavioral Primitives

Gumbsch, C., Butz, M. V., Martius, G.

IEEE Transactions on Cognitive and Developmental Systems, 2019 (article)

Abstract
Voluntary behavior of humans appears to be composed of small, elementary building blocks or behavioral primitives. While this modular organization seems crucial for the learning of complex motor skills and the flexible adaption of behavior to new circumstances, the problem of learning meaningful, compositional abstractions from sensorimotor experiences remains an open challenge. Here, we introduce a computational learning architecture, termed surprise-based behavioral modularization into event-predictive structures (SUBMODES), that explores behavior and identifies the underlying behavioral units completely from scratch. The SUBMODES architecture bootstraps sensorimotor exploration using a self-organizing neural controller. While exploring the behavioral capabilities of its own body, the system learns modular structures that predict the sensorimotor dynamics and generate the associated behavior. In line with recent theories of event perception, the system uses unexpected prediction error signals, i.e., surprise, to detect transitions between successive behavioral primitives. We show that, when applied to two robotic systems with completely different body kinematics, the system manages to learn a variety of complex behavioral primitives. Moreover, after initial self-exploration the system can use its learned predictive models progressively more effectively for invoking model predictive planning and goal-directed control in different tasks and environments.

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arXiv PDF video link (url) DOI Project Page [BibTex]


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Even Delta-Matroids and the Complexity of Planar Boolean CSPs

Kazda, A., Kolmogorov, V., Rolinek, M.

ACM Transactions on Algorithms, 15(2, Special Issue on Soda'17 and Regular Papers):Article Number 22, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Machine Learning for Haptics: Inferring Multi-Contact Stimulation From Sparse Sensor Configuration

Sun, H., Martius, G.

Frontiers in Neurorobotics, 13, pages: 51, 2019 (article)

Abstract
Robust haptic sensation systems are essential for obtaining dexterous robots. Currently, we have solutions for small surface areas such as fingers, but affordable and robust techniques for covering large areas of an arbitrary 3D surface are still missing. Here, we introduce a general machine learning framework to infer multi-contact haptic forces on a 3D robot’s limb surface from internal deformation measured by only a few physical sensors. The general idea of this framework is to predict first the whole surface deformation pattern from the sparsely placed sensors and then to infer number, locations and force magnitudes of unknown contact points. We show how this can be done even if training data can only be obtained for single-contact points using transfer learning at the example of a modified limb of the Poppy robot. With only 10 strain-gauge sensors we obtain a high accuracy also for multiple-contact points. The method can be applied to arbitrarily shaped surfaces and physical sensor types, as long as training data can be obtained.

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link (url) DOI [BibTex]


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Co-Contraction facilitates Body Stiffness Modulation during Swimming with Sensory Feedback in a Soft Biorobotic Physical Model

Jusufi, A., Vogt, D., Wood, R. J.

Integrative and Comparative Biology, 59(Supplement 1):E116-E116, Society of Integrative and Comparative Biology, McLean, VA, 2019 (article)

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DOI [BibTex]

DOI [BibTex]

2018


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Nonlinear decoding of a complex movie from the mammalian retina

Botella-Soler, V., Deny, S., Martius, G., Marre, O., Tkačik, G.

PLOS Computational Biology, 14(5):1-27, Public Library of Science, May 2018 (article)

Abstract
Author summary Neurons in the retina transform patterns of incoming light into sequences of neural spikes. We recorded from ∼100 neurons in the rat retina while it was stimulated with a complex movie. Using machine learning regression methods, we fit decoders to reconstruct the movie shown from the retinal output. We demonstrated that retinal code can only be read out with a low error if decoders make use of correlations between successive spikes emitted by individual neurons. These correlations can be used to ignore spontaneous spiking that would, otherwise, cause even the best linear decoders to “hallucinate” nonexistent stimuli. This work represents the first high resolution single-trial full movie reconstruction and suggests a new paradigm for separating spontaneous from stimulus-driven neural activity.

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DOI [BibTex]

2018


DOI [BibTex]


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Geckos Race across Water using Multiple Mechanisms

Nirody, J., Jinn, J., Libby, T., Lee, T., Jusufi, A., Hu, D., Full, R.

Current Biology, 2018 (article)

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[BibTex]

[BibTex]